| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 380111 | 0 (0.000) | 40 (0.790) +CGAGAT |
28/86 | 0.2 | 64.2% | coding (732/774 nt) | yaiO | outer membrane protein YaiO |
| ? | NC_000913 | 4070444 = | 51 (0.880) | intergenic (‑43/+71) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase | |||||
AAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/380063‑380111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAG > NC_000913/4070444‑4070482 |||||| AAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAC < 1:4261589/50‑1 AGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAC > 1:4183254/1‑49 AGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAC > 1:1855141/1‑49 GAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAC > 1:3113921/1‑47 GAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAC > 1:2388460/1‑47 AATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAC > 1:4181225/1‑46 TCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATG < 1:68861/50‑1 CAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATG > 1:1945967/1‑49 AGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGA > 1:3485504/1‑50 AGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGG < 1:402834/49‑1 AGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGG < 1:3658142/49‑1 AATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACG < 1:3510499/50‑1 ATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGG > 1:183531/1‑50 ATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGG < 1:3651041/50‑1 TTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGT < 1:3820812/50‑1 CCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCC > 1:2320724/1‑50 CAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCC > 1:508316/1‑50 CAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCC > 1:4137952/1‑50 CAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCC < 1:3486201/49‑1 AGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCT < 1:479406/50‑1 GGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTC < 1:1062726/50‑1 GGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTC < 1:567545/50‑1 GGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTC < 1:4118834/50‑1 GGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTC > 1:3942384/1‑50 GTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCG > 1:3267586/1‑50 GTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCG > 1:3093829/1‑50 GTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCG > 1:801570/1‑50 GTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCG < 1:1900599/50‑1 CAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCC > 1:3373878/1‑50 AGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCC > 1:2746975/1‑50 CGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCct > 1:1019810/1‑48 GGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTG < 1:3381544/50‑1 GCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGG > 1:3134343/1‑50 TGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGG > 1:1804685/1‑49 GCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGG > 1:936660/1‑48 GCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGG > 1:1171902/1‑48 GCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGG > 1:1048598/1‑48 CAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGG > 1:2803445/1‑47 CAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGG > 1:2065644/1‑47 AGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAG > 1:1496896/1‑50 GTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGG > 1:1010902/1‑50 CAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTA < 1:3592141/50‑1 CAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGT > 1:184517/1‑48 AGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAG > 1:3088569/1‑50 CGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGtg < 1:3307319/50‑3 CGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGtg < 1:2293190/50‑3 |||||| AAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/380063‑380111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAG > NC_000913/4070444‑4070482 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |