New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 380111	0 (0.000)	40 (0.790) +CGAGAT	28/86	0.2	64.2%	coding (732/774 nt)	yaiO	outer membrane protein YaiO
	?	NC_000913	4070444 =	51 (0.880)					intergenic (‑43/+71)	yihR/yihS	putative aldose 1‑epimerase YihR/sulfoquinovose isomerase

AAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTCAGC  >  NC_000913/380063‑380156                                                 |                                              aaGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc                                              <  1:4261589‑M1/50‑2 (MQ=255)  aGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc                                              >  1:4183254‑M1/1‑48 (MQ=255)  aGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc                                              >  1:1855141‑M1/1‑48 (MQ=255)    gAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc                                              >  1:3113921‑M1/1‑46 (MQ=255)    gAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc                                              >  1:2388460‑M1/1‑46 (MQ=255)     aaTCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc                                              >  1:4181225‑M1/1‑45 (MQ=255)       tCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatg                                        <  1:68861‑M1/50‑8 (MQ=255)        cAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatg                                        >  1:1945967‑M1/1‑42 (MQ=255)         aGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatgga                                      >  1:3485504‑M1/1‑41 (MQ=255)         aGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatgg                                       <  1:402834‑M1/49‑9 (MQ=255)         aGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatgg                                       <  1:3658142‑M1/49‑9 (MQ=255)           aaTTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacg                                    <  1:3510499‑M1/50‑12 (MQ=255)            aTTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacgg                                   >  1:183531‑M1/1‑38 (MQ=255)            aTTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacgg                                   <  1:3651041‑M1/50‑13 (MQ=255)             tttCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggt                                  <  1:3820812‑M1/50‑14 (MQ=255)                ccAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtccc                               >  1:2320724‑M1/1‑34 (MQ=255)                 cAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccc                              >  1:508316‑M1/1‑33 (MQ=255)                 cAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccc                              >  1:4137952‑M1/1‑33 (MQ=255)                 cAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtccc                               <  1:3486201‑M1/49‑17 (MQ=255)                  aGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccct                             <  1:479406‑M1/50‑19 (MQ=255)                   ggTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctc                            <  1:1062726‑M1/50‑20 (MQ=255)                   ggTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctc                            <  1:567545‑M1/50‑20 (MQ=255)                   ggTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctc                            <  1:4118834‑M1/50‑20 (MQ=255)                   ggTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctc                            >  1:3942384‑M1/1‑31 (MQ=255)                    gTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcg                           >  1:3267586‑M1/1‑30 (MQ=255)                    gTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcg                           >  1:3093829‑M1/1‑30 (MQ=255)                    gTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcg                           >  1:801570‑M1/1‑30 (MQ=255)                    gTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcg                           <  1:1900599‑M1/50‑21 (MQ=255)                      cAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcc                         >  1:3373878‑M1/1‑28 (MQ=255)                       aGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccc                        >  1:2746975‑M1/1‑27 (MQ=255)                          cGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccct                     >  1:1019810‑M1/1‑24 (MQ=255)                            ggCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttg                   <  1:3381544‑M1/50‑29 (MQ=255)                             gCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttgg                  >  1:3134343‑M1/1‑21 (MQ=255)                               tGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg                 >  1:1804685‑M1/1‑19 (MQ=255)                                gCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg                 >  1:936660‑M1/1‑18 (MQ=255)                                gCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg                 >  1:1171902‑M1/1‑18 (MQ=255)                                gCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg                 >  1:1048598‑M1/1‑18 (MQ=255)                                 cAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg                 >  1:2803445‑M1/1‑17 (MQ=255)                                 cAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg                 >  1:2065644‑M1/1‑17 (MQ=255)                                   aGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagag            >  1:1496896‑M1/1‑15 (MQ=255)                                    gTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagagg           >  1:1010902‑M1/1‑14 (MQ=255)                                        cAGACCGTTAcgagatggacggtcccctcgcccccttggggagagggtta       <  1:3592141‑M1/50‑41 (MQ=255)                                        cAGACCGTTAcgagatggacggtcccctcgcccccttggggagagggt         >  1:184517‑M1/1‑10 (MQ=255)                                         aGACCGTTAcgagatggacggtcccctcgcccccttggggagagggttag      >  1:3088569‑M1/1‑9 (MQ=255)                                             cGTTAcgagatggacggtcccctcgcccccttggggagagggttagggtg  <  1:3307319‑M1/50‑46 (MQ=255)                                             cGTTAcgagatggacggtcccctcgcccccttggggagagggttagggtg  <  1:2293190‑M1/50‑46 (MQ=255)                                                 |                                              AAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTCAGC  >  NC_000913/380063‑380156

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.