| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 508,873 | Δ40,744 bp | copA–[ylbE] | 37 genes copA, copA, copA, glsA, ybaT, cueR, ybbJ, qmcA, fetA, fetB, cnoX, ybbO, tesA, ybbA, ybbP, rhsD, ybbC, ylbH, ybbD, ylbI, ylbG, selU, allS, allA, allR, gcl, hyi, glxR, ybbW, allB, ybbY, glxK, allE, allC, allD, fdrA, [ylbE] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 508873 | 549616 | 40744 | 61 [0] | [0] 61 | copA–[ylbE] | copA,copA,copA,glsA,ybaT,cueR,ybbJ,qmcA,fetA,fetB,cnoX,ybbO,tesA,ybbA,ybbP,rhsD,ybbC,ylbH,ybbD,ylbI,ylbG,selU,allS,allA,allR,gcl,hyi,glxR,ybbW,allB,ybbY,glxK,allE,allC,allD,fdrA,[ylbE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 508872 | 0 (0.000) | 60 (1.030) | 45/98 | 0.0 | 100% | intergenic (+313/+3) | ybaQ/copA | putative DNA‑binding transcriptional regulator YbaQ/Cu(+) exporting P‑type ATPase |
| ? | NC_000913 | 549617 = | 0 (0.000) | intergenic (+1/‑10) | ylbE/ylbF | DUF1116 domain‑containing protein YlbE/DUF2877 domain‑containing protein YlbF | |||||
CGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/508825‑508872‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCA > NC_000913/549617‑549665 CGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTG > 1:1992011/1‑49 GTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGA < 1:601950/50‑1 GTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGG > 1:1380638/1‑49 GTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGG > 1:749811/1‑49 GTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGG > 1:1756866/1‑49 ATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGC > 1:2566392/1‑50 GCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCG > 1:757357/1‑49 CAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAA < 1:414851/50‑1 CAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAA > 1:2426448/1‑50 CAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAA < 1:3877658/50‑1 AAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAAT > 1:1552239/1‑50 AAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAAT < 1:836169/50‑1 AATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAAT > 1:610899/1‑49 ATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGA > 1:3879888/1‑50 CGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGA < 1:2008418/50‑1 CGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACG < 1:1381870/49‑1 CGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACG < 1:2724613/49‑1 CACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCA < 1:1612894/50‑1 CACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCA > 1:3200510/1‑50 CCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATC > 1:2546667/1‑50 CCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATC < 1:2662844/50‑1 CCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCC < 1:3081447/50‑1 CTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCA < 1:1898802/50‑1 TAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCAT > 1:3330607/1‑50 AAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCC < 1:1065551/50‑1 AAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATC < 1:1497784/49‑1 AAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATC < 1:1592889/49‑1 AGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCT < 1:4191167/50‑1 AGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCT > 1:1526428/1‑50 AGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCT < 1:274136/50‑1 GCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTC < 1:443934/50‑1 CAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCT < 1:368731/50‑1 CAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCT < 1:3453225/50‑1 CAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCT > 1:3164145/1‑50 AGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTG < 1:1964255/50‑1 GCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGC < 1:4070006/50‑1 GCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGC > 1:4328917/1‑50 GCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTT < 1:1967067/50‑1 GCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTT < 1:247160/50‑1 CCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGC > 1:2559387/1‑48 CCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGC > 1:4264668/1‑48 CGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAG < 1:2165372/50‑1 CGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAG > 1:3887576/1‑50 GCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGT < 1:3087798/50‑1 GCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGT < 1:548645/50‑1 GCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAG > 1:2948719/1‑49 GCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAG > 1:4338812/1‑49 GCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAG > 1:4120732/1‑49 CAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTA < 1:3503682/50‑1 AATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAG < 1:967082/50‑1 AATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAG > 1:3230575/1‑50 TGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTA < 1:3508115/50‑1 TGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTA < 1:204631/50‑1 TGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAG > 1:4352950/1‑48 TGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAG > 1:2933167/1‑48 ATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGC > 1:4138823/1‑50 ATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGC < 1:3607960/50‑1 ATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGC > 1:1275215/1‑50 ATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAG < 1:600748/49‑1 TGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCA > 1:483445/1‑50 CGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/508825‑508872‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCA > NC_000913/549617‑549665 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |