| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 508,873 | Δ40,744 bp | copA–[ylbE] | 37 genes copA, copA, copA, glsA, ybaT, cueR, ybbJ, qmcA, fetA, fetB, cnoX, ybbO, tesA, ybbA, ybbP, rhsD, ybbC, ylbH, ybbD, ylbI, ylbG, selU, allS, allA, allR, gcl, hyi, glxR, ybbW, allB, ybbY, glxK, allE, allC, allD, fdrA, [ylbE] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 508873 | 549616 | 40744 | 61 [0] | [0] 61 | copA–[ylbE] | copA,copA,copA,glsA,ybaT,cueR,ybbJ,qmcA,fetA,fetB,cnoX,ybbO,tesA,ybbA,ybbP,rhsD,ybbC,ylbH,ybbD,ylbI,ylbG,selU,allS,allA,allR,gcl,hyi,glxR,ybbW,allB,ybbY,glxK,allE,allC,allD,fdrA,[ylbE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 508872 | 0 (0.000) | 60 (1.030) | 45/98 | 0.0 | 100% | intergenic (+313/+3) | ybaQ/copA | putative DNA‑binding transcriptional regulator YbaQ/Cu(+) exporting P‑type ATPase |
| ? | NC_000913 | 549617 = | 0 (0.000) | intergenic (+1/‑10) | ylbE/ylbF | DUF1116 domain‑containing protein YlbE/DUF2877 domain‑containing protein YlbF | |||||
TTTGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCAC > NC_000913/549569‑549666 | cgtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtg > 1:1992011‑M2/49‑49 (MQ=255) gtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtgg > 1:1380638‑M2/48‑49 (MQ=255) gtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtgg > 1:749811‑M2/48‑49 (MQ=255) gtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtgg > 1:1756866‑M2/48‑49 (MQ=255) gtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGa < 1:601950‑M2/3‑1 (MQ=255) atgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcgc > 1:2566392‑M2/44‑50 (MQ=255) gccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcgcg > 1:757357‑M2/42‑49 (MQ=255) caaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCaa < 1:414851‑M2/11‑1 (MQ=255) caaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCaa > 1:2426448‑M2/40‑50 (MQ=255) caaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCaa < 1:3877658‑M2/11‑1 (MQ=255) aaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAAt < 1:836169‑M2/12‑1 (MQ=255) aaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAAt > 1:1552239‑M2/39‑50 (MQ=255) aatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAAt > 1:610899‑M2/38‑49 (MQ=255) atgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGa > 1:3879888‑M2/37‑50 (MQ=255) cgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACg < 1:2724613‑M2/16‑1 (MQ=255) cgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACg < 1:1381870‑M2/16‑1 (MQ=255) cgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGa < 1:2008418‑M2/17‑1 (MQ=255) caccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatca < 1:1612894‑M2/20‑1 (MQ=255) caccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatca > 1:3200510‑M2/31‑50 (MQ=255) ccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcatc < 1:2662844‑M2/22‑1 (MQ=255) ccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcatc > 1:2546667‑M2/29‑50 (MQ=255) cctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatcc < 1:3081447‑M2/23‑1 (MQ=255) ctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatcca < 1:1898802‑M2/24‑1 (MQ=255) taaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatccat > 1:3330607‑M2/26‑50 (MQ=255) aagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatccatc < 1:1592889‑M2/26‑1 (MQ=255) aagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatccatc < 1:1497784‑M2/26‑1 (MQ=255) aagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATCatccatcc < 1:1065551‑M2/27‑1 (MQ=255) agcagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCct < 1:4191167‑M2/28‑1 (MQ=255) agcagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCct < 1:274136‑M2/28‑1 (MQ=255) agcagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCct > 1:1526428‑M2/23‑50 (MQ=255) gcagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctc < 1:443934‑M2/29‑1 (MQ=255) cagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctct > 1:3164145‑M2/21‑50 (MQ=255) cagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctct < 1:3453225‑M2/30‑1 (MQ=255) cagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctct < 1:368731‑M2/30‑1 (MQ=255) agcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTg < 1:1964255‑M2/31‑1 (MQ=255) gcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGc > 1:4328917‑M2/19‑50 (MQ=255) gcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGc < 1:4070006‑M2/32‑1 (MQ=255) gcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCtt < 1:247160‑M2/34‑1 (MQ=255) gcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCtt < 1:1967067‑M2/34‑1 (MQ=255) ccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGc > 1:4264668‑M2/13‑48 (MQ=255) ccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGc > 1:2559387‑M2/13‑48 (MQ=255) cgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCag < 1:2165372‑M2/39‑1 (MQ=255) cgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCag > 1:3887576‑M2/12‑50 (MQ=255) gcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagt < 1:3087798‑M2/40‑1 (MQ=255) gcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagt < 1:548645‑M2/40‑1 (MQ=255) gcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCag > 1:4120732‑M2/11‑49 (MQ=255) gcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCag > 1:2948719‑M2/11‑49 (MQ=255) gcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCag > 1:4338812‑M2/11‑49 (MQ=255) caatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagta < 1:3503682‑M2/41‑1 (MQ=255) aatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag < 1:967082‑M2/42‑1 (MQ=255) aatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag > 1:3230575‑M2/9‑50 (MQ=255) tgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag > 1:4352950‑M2/7‑48 (MQ=255) tgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag > 1:2933167‑M2/7‑48 (MQ=255) tgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAgtagta < 1:3508115‑M2/44‑1 (MQ=255) tgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAgtagta < 1:204631‑M2/44‑1 (MQ=255) atgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGtagtag < 1:600748‑M2/45‑1 (MQ=255) atgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAgc > 1:4138823‑M2/5‑50 (MQ=255) atgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAgc < 1:3607960‑M2/46‑1 (MQ=255) atgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAgc > 1:1275215‑M2/5‑50 (MQ=255) tGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCa > 1:483445‑M2/2‑50 (MQ=255) ggAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCAc > 1:2315071/1‑50 (MQ=255) | TTTGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCAC > NC_000913/549569‑549666 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |