| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 765,208 | Δ5,405 bp | [mngR]–mngB | [mngR], mngA, mngB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 765208 | 770612 | 5405 | 52 [0] | [0] 52 | [mngR]–mngB | [mngR],mngA,mngB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 765207 | 0 (0.000) | 48 (0.850) | 32/96 | 0.2 | 100% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
| ? | NC_000913 | 770613 = | 0 (0.000) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I | |||||
GCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/765158‑765207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGG > NC_000913/770613‑770661 GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:3540012/1‑49 CGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATA < 1:2358865/50‑1 CGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATA < 1:1145102/50‑1 CGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATA < 1:761274/50‑1 CGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:2478125/1‑48 GATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG < 1:1664755/50‑1 GATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG > 1:627303/1‑50 GATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG > 1:1110739/1‑50 ATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGC < 1:3646917/50‑1 ATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG > 1:910822/1‑49 TGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCA < 1:537460/50‑1 TTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATC < 1:3390107/50‑1 TTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATC > 1:3807618/1‑49 TTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCA > 1:4243436/1‑49 TCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAA < 1:1765082/49‑1 CGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAA < 1:4311066/49‑1 GCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACC < 1:1538014/50‑1 GCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACC > 1:1657271/1‑50 CTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACC > 1:633867/1‑49 CGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAG < 1:4292017/50‑1 GCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGC > 1:487624/1‑50 CTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGC > 1:4388231/1‑49 CTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGC > 1:2278174/1‑49 CTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGC > 1:1891448/1‑49 TATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCA > 1:1823189/1‑50 TCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACA > 1:4382523/1‑50 TCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACA > 1:4231254/1‑50 TCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCAC < 1:1307366/49‑1 GTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGC > 1:269568/1‑50 GTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGC < 1:527648/50‑1 aaTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCG > 1:1923290/3‑50 aaTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGC < 1:4154581/47‑1 aTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGG > 1:2175721/2‑50 aTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGG > 1:3244648/2‑50 aTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGG > 1:1187353/2‑50 TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:2978376/1‑50 TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC < 1:1818270/50‑1 TATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:4224244/1‑49 AGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:1023662/1‑46 AGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:627295/1‑46 TCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATT > 1:3238034/1‑50 TCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATT > 1:2810047/1‑50 TCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTT < 1:979237/50‑1 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA > 1:2320644/1‑50 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTG < 1:3109773/49‑1 GTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA > 1:3167531/1‑49 GTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA > 1:50782/1‑49 GTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA > 1:3082938/1‑49 GTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA > 1:1466418/1‑49 TTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACA > 1:1034284/1‑48 ATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGG > 1:3904673/1‑50 ATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGG > 1:1123676/1‑50 GCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/765158‑765207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGG > NC_000913/770613‑770661 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |