| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 765,208 | Δ5,405 bp | [mngR]–mngB | [mngR], mngA, mngB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 765208 | 770612 | 5405 | 52 [0] | [0] 52 | [mngR]–mngB | [mngR],mngA,mngB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 765207 | 0 (0.000) | 48 (0.850) | 32/96 | 0.2 | 100% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
| ? | NC_000913 | 770613 = | 0 (0.000) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I | |||||
CTTTTTTACCCGGCCAGTCACGGACGTTCAGTTACCGGCTTGCCTGAATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGGG > NC_000913/770565‑770662 | cgatgattttcgctgcgctatcagggtaaattatagtcatcggtattata < 1:2358865‑M2/2‑1 (MQ=255)cgatgattttcgctgcgctatcagggtaaattatagtcatcggtattata < 1:1145102‑M2/2‑1 (MQ=255)cgatgattttcgctgcgctatcagggtaaattatagtcatcggtattata < 1:761274‑M2/2‑1 (MQ=255) gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg > 1:1110739‑M2/48‑50 (MQ=255) gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg > 1:627303‑M2/48‑50 (MQ=255) gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg < 1:1664755‑M2/3‑1 (MQ=255) atgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg > 1:910822‑M2/47‑49 (MQ=255) atgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGc < 1:3646917‑M2/4‑1 (MQ=255) tgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCa < 1:537460‑M2/5‑1 (MQ=255) ttttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATc < 1:3390107‑M2/8‑1 (MQ=255) tttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATc > 1:3807618‑M2/42‑49 (MQ=255) ttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCa > 1:4243436‑M2/41‑49 (MQ=255) tcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCaa < 1:1765082‑M2/10‑1 (MQ=255) cgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCaaa < 1:4311066‑M2/11‑1 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc > 1:1657271‑M2/38‑50 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc < 1:1538014‑M2/13‑1 (MQ=255) ctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc > 1:633867‑M2/37‑49 (MQ=255) cgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAg < 1:4292017‑M2/17‑1 (MQ=255) gctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGc > 1:487624‑M2/33‑50 (MQ=255) ctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGc > 1:2278174‑M2/32‑49 (MQ=255) ctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGc > 1:4388231‑M2/32‑49 (MQ=255) ctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGc > 1:1891448‑M2/32‑49 (MQ=255) tatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca > 1:1823189‑M2/31‑50 (MQ=255) tcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCcaca > 1:4231254‑M2/29‑50 (MQ=255) tcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCcaca > 1:4382523‑M2/29‑50 (MQ=255) tcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCcac < 1:1307366‑M2/21‑1 (MQ=255) gtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATgc < 1:527648‑M2/27‑1 (MQ=255) gtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATgc > 1:269568‑M2/24‑50 (MQ=255) aattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATgcgc < 1:4154581‑M2/29‑1 (MQ=255) aattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGcgcg > 1:1923290‑M2/21‑50 (MQ=255) attatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCgg > 1:3244648‑M2/20‑50 (MQ=255) attatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCgg > 1:1187353‑M2/20‑50 (MQ=255) attatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCgg > 1:2175721‑M2/20‑50 (MQ=255) ttatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc < 1:1818270‑M2/32‑1 (MQ=255) ttatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:2978376‑M2/19‑50 (MQ=255) tatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:4224244‑M2/18‑49 (MQ=255) agtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:627295‑M2/15‑46 (MQ=255) agtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:1023662‑M2/15‑46 (MQ=255) tcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAtt > 1:2810047‑M2/13‑50 (MQ=255) tcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAtt > 1:3238034‑M2/13‑50 (MQ=255) tcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgtt < 1:979237‑M2/41‑1 (MQ=255) ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgttg < 1:3109773‑M2/42‑1 (MQ=255) ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGa > 1:2320644‑M2/8‑50 (MQ=255) gtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGa > 1:3167531‑M2/7‑49 (MQ=255) gtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGa > 1:50782‑M2/7‑49 (MQ=255) gtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGa > 1:3082938‑M2/7‑49 (MQ=255) gtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGa > 1:1466418‑M2/7‑49 (MQ=255) ttaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACa > 1:1034284‑M2/4‑48 (MQ=255) aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAgg > 1:3904673‑M2/2‑50 (MQ=255) aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAgg > 1:1123676‑M2/2‑50 (MQ=255) tAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAggg < 1:2687294/50‑1 (MQ=255) tAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAgg < 1:386519/49‑1 (MQ=255) | CTTTTTTACCCGGCCAGTCACGGACGTTCAGTTACCGGCTTGCCTGAATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGGG > NC_000913/770565‑770662 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |