| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,509,562 | Δ46,201 bp | [hicB]–maeA | 43 genes [hicB], ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, rhsE, ydcD, yncO, yncI, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddJ, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1509562 | 1555762 | 46201 | 60 [0] | [0] 64 | [hicB]–maeA | [hicB],ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ortT,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,rhsE,ydcD,yncO,yncI,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU,yddJ,yddK,yddL,yddG,fdnG,fdnH,fdnI,yddM,adhP,maeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1509561 | 0 (0.000) | 60 (1.030) | 42/98 | 0.0 | 100% | coding (54/417 nt) | hicB | antitoxin of the HicA‑HicB toxin‑antitoxin system |
| ? | NC_000913 | 1555763 = | 0 (0.000) | intergenic (‑94/+63) | maeA/sra | malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22 | |||||
TATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1509514‑1509561‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAG > NC_000913/1555763‑1555809 TATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTA > 1:283479/1‑49TATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTA > 1:2167129/1‑49 ATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAA > 1:1532162/1‑50 TCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAA < 1:463075/49‑1 CCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACA > 1:1565371/1‑49 CCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACA < 1:2267591/49‑1 CGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAA < 1:2088191/50‑1 CGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAA > 1:838580/1‑49 CGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAA > 1:3789796/1‑49 CGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAA > 1:2779396/1‑49 GTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAA > 1:936290/1‑49 GTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAA > 1:1443957/1‑49 GTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAA > 1:268250/1‑49 TCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAA < 1:1236259/50‑1 CACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAA > 1:3946192/1‑49 ACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACA > 1:4027740/1‑50 ACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACA > 1:3833839/1‑50 ACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACA > 1:2867916/1‑50 ACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAAC < 1:4286438/49‑1 TCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACAC > 1:107953/1‑49 CTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCA > 1:637510/1‑50 TTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCAT > 1:3922709/1‑50 TTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCAT > 1:3785469/1‑50 TACACCCGCGCCGGAAGGCGGGTATATGGTTTCTAAACAAAAACACCATT > 1:3373372/1‑50 ACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTG > 1:3626718/1‑50 ACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATT < 1:2999173/49‑1 ACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCAT < 1:4071948/48‑1 ACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCA < 1:4130713/47‑1 ACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCA < 1:3343405/47‑1 CACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTG < 1:2189354/49‑1 CGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAG > 1:131268/1‑50 CGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGG > 1:1498489/1‑49 GCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGC > 1:524412/1‑49 GGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATG > 1:2616459/1‑50 GGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATG > 1:4259881/1‑50 GCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTT < 1:3223947/50‑1 CGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTT < 1:3034239/50‑1 CGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTT > 1:3907112/1‑49 TTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAAT > 1:3988679/1‑50 TTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAAT < 1:2113593/50‑1 TTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAAT > 1:425131/1‑50 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCG > 1:3690685/1‑50 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCG > 1:1362426/1‑50 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCG > 1:2153258/1‑50 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCG > 1:613450/1‑50 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCG > 1:812517/1‑50 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATC < 1:3928129/49‑1 TATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGT > 1:1968912/1‑50 TATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCG < 1:2985320/49‑1 ATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGT > 1:4368442/1‑49 TGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCA > 1:598072/1‑50 GGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAT > 1:659210/1‑50 GGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAT > 1:844439/1‑50 GTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATT < 1:2309520/50‑1 GTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATT < 1:1410545/50‑1 GTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATT < 1:1844879/50‑1 GTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATT > 1:129814/1‑50 GTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAT < 1:2424854/49‑1 TTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTG < 1:3453267/50‑1 CTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAG > 1:2135635/1‑49 TATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1509514‑1509561‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAG > NC_000913/1555763‑1555809 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |