| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,509,562 | Δ46,201 bp | [hicB]–maeA | 43 genes [hicB], ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, rhsE, ydcD, yncO, yncI, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddJ, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1509562 | 1555762 | 46201 | 60 [0] | [0] 64 | [hicB]–maeA | [hicB],ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ortT,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,rhsE,ydcD,yncO,yncI,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU,yddJ,yddK,yddL,yddG,fdnG,fdnH,fdnI,yddM,adhP,maeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1509561 | 0 (0.000) | 60 (1.030) | 42/98 | 0.0 | 100% | coding (54/417 nt) | hicB | antitoxin of the HicA‑HicB toxin‑antitoxin system |
| ? | NC_000913 | 1555763 = | 0 (0.000) | intergenic (‑94/+63) | maeA/sra | malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22 | |||||
GTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGAC > NC_000913/1555715‑1555812 | tatcccgtcactcttacacccgcgccggaaggcggttatatggtttcta > 1:283479‑M2/49‑49 (MQ=255)tatcccgtcactcttacacccgcgccggaaggcggttatatggtttcta > 1:2167129‑M2/49‑49 (MQ=255) atcccgtcactcttacacccgcgccggaaggcggttatatggtttctaaa > 1:1532162‑M2/48‑50 (MQ=255) tcccgtcactcttacacccgcgccggaaggcggttatatggtttctaaa < 1:463075‑M2/3‑1 (MQ=255) ccgtcactcttacacccgcgccggaaggcggttatatggtttctAAACa > 1:1565371‑M2/45‑49 (MQ=255) ccgtcactcttacacccgcgccggaaggcggttatatggtttctAAACa < 1:2267591‑M2/5‑1 (MQ=255) cgtcactcttacacccgcgccggaaggcggttatatggtttctAAACaaa < 1:2088191‑M2/7‑1 (MQ=255) cgtcactcttacacccgcgccggaaggcggttatatggtttctAAACaa > 1:838580‑M2/44‑49 (MQ=255) cgtcactcttacacccgcgccggaaggcggttatatggtttctAAACaa > 1:3789796‑M2/44‑49 (MQ=255) cgtcactcttacacccgcgccggaaggcggttatatggtttctAAACaa > 1:2779396‑M2/44‑49 (MQ=255) gtcactcttacacccgcgccggaaggcggttatatggtttctAAACaaa > 1:936290‑M2/43‑49 (MQ=255) gtcactcttacacccgcgccggaaggcggttatatggtttctAAACaaa > 1:1443957‑M2/43‑49 (MQ=255) gtcactcttacacccgcgccggaaggcggttatatggtttctAAACaaa > 1:268250‑M2/43‑49 (MQ=255) tcactcttacacccgcgccggaaggcggttatatggtttctAAACaaaaa < 1:1236259‑M2/9‑1 (MQ=255) cactcttacacccgcgccggaaggcggttatatggtttctAAACaaaaa > 1:3946192‑M2/41‑49 (MQ=255) actcttacacccgcgccggaaggcggttatatggtttctAAACAAAAaca > 1:4027740‑M2/40‑50 (MQ=255) actcttacacccgcgccggaaggcggttatatggtttctAAACAAAAaca > 1:3833839‑M2/40‑50 (MQ=255) actcttacacccgcgccggaaggcggttatatggtttctAAACAAAAaca > 1:2867916‑M2/40‑50 (MQ=255) actcttacacccgcgccggaaggcggttatatggtttctAAACAAAAac < 1:4286438‑M2/10‑1 (MQ=255) tcttacacccgcgccggaaggcggttatatggtttctAAACAAAAacac > 1:107953‑M2/38‑49 (MQ=255) cttacacccgcgccggaaggcggttatatggtttctAAACAAAAACACCa > 1:637510‑M2/37‑50 (MQ=255) ttacacccgcgccggaaggcggttatatggtttctAAACAAAAACACCAt > 1:3785469‑M2/36‑50 (MQ=255) ttacacccgcgccggaaggcggttatatggtttctAAACAAAAACACCAt > 1:3922709‑M2/36‑50 (MQ=255) tacacccgcgccggaaggcgggtatatggtttctAAACAAAAACACCAtt > 1:3373372‑M2/35‑50 (MQ=255) acacccgcgccggaaggcggttatatggtttctAAACAAAAACACCa < 1:4130713‑M2/14‑1 (MQ=255) acacccgcgccggaaggcggttatatggtttctAAACAAAAACACCa < 1:3343405‑M2/14‑1 (MQ=255) acacccgcgccggaaggcggttatatggtttctAAACAAAAACACCAtt < 1:2999173‑M2/16‑1 (MQ=255) acacccgcgccggaaggcggttatatggtttctAAACAAAAACACCAt < 1:4071948‑M2/15‑1 (MQ=255) acacccgcgccggaaggcggttatatggtttctAAACAAAAACACCATTg > 1:3626718‑M2/34‑50 (MQ=255) cacccgcgccggaaggcggttatatggtttctAAACAAAAACACCATTg < 1:2189354‑M2/17‑1 (MQ=255) cgcgccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAg > 1:131268‑M2/29‑50 (MQ=255) cgccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAgg > 1:1498489‑M2/27‑49 (MQ=255) gccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGc > 1:524412‑M2/26‑49 (MQ=255) ggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATg > 1:4259881‑M2/23‑50 (MQ=255) ggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATg > 1:2616459‑M2/23‑50 (MQ=255) gcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGtt < 1:3223947‑M2/33‑1 (MQ=255) cggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGttt < 1:3034239‑M2/34‑1 (MQ=255) cggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGtt > 1:3907112‑M2/17‑49 (MQ=255) ttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAAt < 1:2113593‑M2/37‑1 (MQ=255) ttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAAt > 1:3988679‑M2/14‑50 (MQ=255) ttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAAt > 1:425131‑M2/14‑50 (MQ=255) atatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATc < 1:3928129‑M2/38‑1 (MQ=255) atatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCg > 1:3690685‑M2/12‑50 (MQ=255) atatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCg > 1:613450‑M2/12‑50 (MQ=255) atatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCg > 1:1362426‑M2/12‑50 (MQ=255) atatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCg > 1:2153258‑M2/12‑50 (MQ=255) atatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCg > 1:812517‑M2/12‑50 (MQ=255) tatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCg < 1:2985320‑M2/39‑1 (MQ=255) tatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGt > 1:1968912‑M2/11‑50 (MQ=255) atggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGt > 1:4368442‑M2/10‑49 (MQ=255) tggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCa > 1:598072‑M2/9‑50 (MQ=255) ggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAt > 1:659210‑M2/8‑50 (MQ=255) ggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAt > 1:844439‑M2/8‑50 (MQ=255) gtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAtt > 1:129814‑M2/7‑50 (MQ=255) gtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAtt < 1:2309520‑M2/44‑1 (MQ=255) gtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAtt < 1:1844879‑M2/44‑1 (MQ=255) gtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAtt < 1:1410545‑M2/44‑1 (MQ=255) gtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAt < 1:2424854‑M2/43‑1 (MQ=255) tttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTg < 1:3453267‑M2/45‑1 (MQ=255) ctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAg > 1:2135635‑M2/3‑49 (MQ=255) aaacaaaaacaCCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGAc > 1:2333313/1‑50 (MQ=255) aaacaaaaacaCCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGAc > 1:3697375/1‑50 (MQ=255) aaacaaaaacaCCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGAc > 1:3352589/1‑50 (MQ=255) aaacaaaaacaCCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGAc > 1:1386618/1‑50 (MQ=255) | GTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGAC > NC_000913/1555715‑1555812 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |