| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,627,518 | Δ25,244 bp | [ydfG]–[ynfP] | 48 genes [ydfG], ydfH, ydfZ, ydfI, ydfJ, ynfT, ydfK, pinQ, tfaQ, ydfN, nohA, ynfO, ydfO, gnsB, ynfN, ynfR, ynfQ, cspI, rzpQ, rzoQ, rrrQ, ydfR, essQ, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, dicC, dicA, ydfA, ydfB, ydfC, dicF, dicB, ydfD, ydfE, insD‑7, intQ, [ynfP] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1627518 | 1652761 | 25244 | 75 [0] | [0] 75 | [ydfG]–[ynfP] | [ydfG],ydfH,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,ydfN,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,ydfE,insD‑7,intQ,[ynfP] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1627517 | 0 (0.000) | 74 (1.300) | 48/96 | 0.0 | 100% | coding (1/747 nt) | ydfG | 3‑hydroxy acid dehydrogenase |
| ? | NC_000913 | 1652762 = | 0 (0.000) | coding (77/111 nt) | ynfP | protein YnfP | |||||
GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1627468‑1627517‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTA > NC_000913/1652762‑1652809 GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA < 1:790058/50‑1 ATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG > 1:1122397/1‑50 ATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG > 1:1298610/1‑50 ATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG < 1:1355836/50‑1 ATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG < 1:748244/50‑1 CCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG > 1:1312591/1‑49 CGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCA < 1:1084693/50‑1 CGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG > 1:925308/1‑48 GTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAG > 1:281833/1‑50 TGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGT < 1:4358410/50‑1 TGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGT > 1:3036904/1‑50 GCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTG > 1:2251268/1‑50 GCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTG > 1:3660603/1‑50 CTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGC > 1:3412428/1‑50 CTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGC > 1:4397606/1‑50 ATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:1344659/1‑49 ATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:3720489/1‑49 ATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:3642653/1‑49 TATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGC > 1:1627454/1‑49 TATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGC > 1:3968527/1‑49 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCA > 1:2376899/1‑50 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCC < 1:3301482/49‑1 TTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCAT > 1:3219272/1‑50 GACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATC < 1:1480305/49‑1 GACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATC < 1:3632037/49‑1 ACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCC < 1:2131350/50‑1 ACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCC < 1:273489/50‑1 ACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGA < 1:1241586/50‑1 CACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGAT < 1:805889/50‑1 CACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGA > 1:4383619/1‑49 ACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATA < 1:58978/50‑1 ACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATA > 1:3154651/1‑50 CAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATAC > 1:2073194/1‑50 AAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACT > 1:2351610/1‑50 AAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTG > 1:4193175/1‑50 AGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCT > 1:4429586/1‑50 AGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCT < 1:644240/50‑1 CGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGC > 1:1462082/1‑50 CGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGC > 1:1669406/1‑50 GTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCT > 1:4119729/1‑50 GTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCT > 1:4226144/1‑50 GTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCT > 1:3352322/1‑50 TGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT > 1:245673/1‑50 TGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT > 1:2221553/1‑50 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT < 1:3400547/49‑1 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT < 1:456552/49‑1 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT < 1:2598139/49‑1 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT > 1:1158453/1‑49 AGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCA < 1:552423/50‑1 AGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCA < 1:3972134/50‑1 AGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTC < 1:742768/49‑1 AGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTC < 1:990417/49‑1 GGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAC < 1:2876812/50‑1 GGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAC > 1:2574340/1‑50 GAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAC > 1:1471506/1‑49 AACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACC > 1:758953/1‑49 CAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAA < 1:4402561/50‑1 AGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAT > 1:2598888/1‑50 GTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATC > 1:1480991/1‑50 GTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATC > 1:2268584/1‑50 GTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATC < 1:2717793/50‑1 TGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCC > 1:1096641/1‑50 TGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCC < 1:2261486/50‑1 TGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCC < 1:4448047/50‑1 TGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCC > 1:4275942/1‑50 TGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCC < 1:4096500/50‑1 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTT < 1:3098464/50‑1 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTT < 1:901408/50‑1 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCT > 1:2387550/1‑49 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCT > 1:654785/1‑49 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCT < 1:1604037/49‑1 GAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTA < 1:354143/50‑1 GAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTA < 1:4028639/50‑1 GAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTA < 1:1467706/50‑1 GAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTA < 1:4142285/50‑1 GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1627468‑1627517‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTA > NC_000913/1652762‑1652809 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |