| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,627,518 | Δ25,244 bp | [ydfG]–[ynfP] | 48 genes [ydfG], ydfH, ydfZ, ydfI, ydfJ, ynfT, ydfK, pinQ, tfaQ, ydfN, nohA, ynfO, ydfO, gnsB, ynfN, ynfR, ynfQ, cspI, rzpQ, rzoQ, rrrQ, ydfR, essQ, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, dicC, dicA, ydfA, ydfB, ydfC, dicF, dicB, ydfD, ydfE, insD‑7, intQ, [ynfP] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1627518 | 1652761 | 25244 | 75 [0] | [0] 75 | [ydfG]–[ynfP] | [ydfG],ydfH,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,ydfN,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,ydfE,insD‑7,intQ,[ynfP] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1627517 | 0 (0.000) | 74 (1.300) | 48/96 | 0.0 | 100% | coding (1/747 nt) | ydfG | 3‑hydroxy acid dehydrogenase |
| ? | NC_000913 | 1652762 = | 0 (0.000) | coding (77/111 nt) | ynfP | protein YnfP | |||||
GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGATGATCGTTTTAGTAACTGGAGCAACGGCAGGTTTTGGTGAATGCATTA > NC_000913/1627468‑1627565 | gCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA < 1:790058‑M1/50‑1 (MQ=255) aTCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAag > 1:1122397‑M1/1‑48 (MQ=255) aTCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAag > 1:1298610‑M1/1‑48 (MQ=255) aTCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAag < 1:1355836‑M1/50‑3 (MQ=255) aTCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAag < 1:748244‑M1/50‑3 (MQ=255) ccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg > 1:1312591‑M1/1‑45 (MQ=255) cGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgca < 1:1084693‑M1/50‑7 (MQ=255) cGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg > 1:925308‑M1/1‑44 (MQ=255) gTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcag > 1:281833‑M1/1‑43 (MQ=255) tGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagt < 1:4358410‑M1/50‑9 (MQ=255) tGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagt > 1:3036904‑M1/1‑42 (MQ=255) gCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtg > 1:2251268‑M1/1‑41 (MQ=255) gCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtg > 1:3660603‑M1/1‑41 (MQ=255) cTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgc > 1:3412428‑M1/1‑40 (MQ=255) cTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgc > 1:4397606‑M1/1‑40 (MQ=255) aTGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:1344659‑M1/1‑38 (MQ=255) aTGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:3720489‑M1/1‑38 (MQ=255) aTGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:3642653‑M1/1‑38 (MQ=255) tATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagc > 1:1627454‑M1/1‑34 (MQ=255) tATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagc > 1:3968527‑M1/1‑34 (MQ=255) aTTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagcca > 1:2376899‑M1/1‑33 (MQ=255) aTTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagcc < 1:3301482‑M1/49‑17 (MQ=255) ttGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccat > 1:3219272‑M1/1‑32 (MQ=255) gACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatc < 1:1480305‑M1/49‑20 (MQ=255) gACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatc < 1:3632037‑M1/49‑20 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc < 1:2131350‑M1/50‑22 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc < 1:273489‑M1/50‑22 (MQ=255) acacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccga < 1:1241586‑M1/50‑24 (MQ=255) cacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgat < 1:805889‑M1/50‑25 (MQ=255) cacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccga > 1:4383619‑M1/1‑26 (MQ=255) acaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgata < 1:58978‑M1/50‑26 (MQ=255) acaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgata > 1:3154651‑M1/1‑25 (MQ=255) caAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatac > 1:2073194‑M1/1‑24 (MQ=255) aaaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatact > 1:2351610‑M1/1‑23 (MQ=255) aaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactg > 1:4193175‑M1/1‑22 (MQ=255) aGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgct > 1:4429586‑M1/1‑20 (MQ=255) aGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgct < 1:644240‑M1/50‑31 (MQ=255) cGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgc > 1:1462082‑M1/1‑18 (MQ=255) cGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgc > 1:1669406‑M1/1‑18 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct > 1:4119729‑M1/1‑17 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct > 1:4226144‑M1/1‑17 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct > 1:3352322‑M1/1‑17 (MQ=255) tGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:245673‑M1/1‑15 (MQ=255) tGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:2221553‑M1/1‑15 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt < 1:3400547‑M1/49‑36 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt < 1:456552‑M1/49‑36 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt < 1:2598139‑M1/49‑36 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:1158453‑M1/1‑14 (MQ=255) aGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttca < 1:552423‑M1/50‑38 (MQ=255) aGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttca < 1:3972134‑M1/50‑38 (MQ=255) aGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttc < 1:742768‑M1/49‑37 (MQ=255) aGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttc < 1:990417‑M1/49‑37 (MQ=255) ggAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcac < 1:2876812‑M1/50‑39 (MQ=255) ggAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcac > 1:2574340‑M1/1‑12 (MQ=255) gAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcac > 1:1471506‑M1/1‑11 (MQ=255) aaCAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacc > 1:758953‑M1/1‑10 (MQ=255) cAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaa < 1:4402561‑M1/50‑43 (MQ=255) aGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaat > 1:2598888‑M1/1‑7 (MQ=255) gTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatc > 1:1480991‑M1/1‑6 (MQ=255) gTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatc > 1:2268584‑M1/1‑6 (MQ=255) gTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatc < 1:2717793‑M1/50‑45 (MQ=255) tGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatcc > 1:1096641‑M1/1‑5 (MQ=255) tGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatcc < 1:2261486‑M1/50‑46 (MQ=255) tGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatcc < 1:4448047‑M1/50‑46 (MQ=255) tGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatcc > 1:4275942‑M1/1‑5 (MQ=255) tGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatcc < 1:4096500‑M1/50‑46 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcctt < 1:3098464‑M1/50‑48 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcctt < 1:901408‑M1/50‑48 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct > 1:2387550‑M1/1‑3 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct > 1:654785‑M1/1‑3 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct < 1:1604037‑M1/49‑47 (MQ=255) gaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcctta < 1:354143‑M1/50‑49 (MQ=255) gaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcctta < 1:4028639‑M1/50‑49 (MQ=255) gaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcctta < 1:1467706‑M1/50‑49 (MQ=255) gaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcctta < 1:4142285‑M1/50‑49 (MQ=255) | GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGATGATCGTTTTAGTAACTGGAGCAACGGCAGGTTTTGGTGAATGCATTA > NC_000913/1627468‑1627565 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |