| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,509,631 | Δ8,319 bp | [yfeO]–pdeA | [yfeO], ypeC, mntH, nupC, insL‑3, pdeA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2509631 | 2517949 | 8319 | 60 [0] | [0] 59 | [yfeO]–pdeA | [yfeO],ypeC,mntH,nupC,insL‑3,pdeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2509630 | 0 (0.000) | 58 (1.000) | 48/98 | 0.0 | 100% | coding (1/1257 nt) | yfeO | putative transport protein YfeO |
| ? | NC_000913 | 2517950 = | 0 (0.000) | intergenic (‑118/+91) | pdeA/alaX | putative c‑di‑GMP phosphodiesterase PdeA/tRNA‑Ala | |||||
TGCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2509583‑2509630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAG > NC_000913/2517950‑2517998 TGCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAC < 1:326032/49‑1 CAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGG < 1:2853993/50‑1 CAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGG > 1:281793/1‑50 CAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAG < 1:3046339/49‑1 AAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGC > 1:303098/1‑50 AAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGC > 1:4390861/1‑50 AAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGC < 1:2495275/50‑1 AGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCG > 1:290723/1‑50 AGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCG < 1:1217605/50‑1 AGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCG > 1:2008165/1‑50 GCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGG > 1:3931272/1‑50 CTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGG > 1:2700900/1‑49 CTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGG > 1:2445841/1‑49 TGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCA > 1:3591913/1‑50 GGCAAACTAAGTATCTGACCCCGCATAAGGAATAGCACACAGGCGGCACT < 1:3900734/50‑1 GGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACT < 1:3608705/50‑1 GGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCAC > 1:3092484/1‑49 GCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTA < 1:1861509/50‑1 CAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAA > 1:3611155/1‑50 CAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAA < 1:3807261/50‑1 CAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAA > 1:4139778/1‑50 AAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAAC < 1:2521432/50‑1 AAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAAC > 1:116401/1‑50 AACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACC < 1:209471/50‑1 AACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACC > 1:1327296/1‑50 AGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGAC > 1:4241408/1‑50 AGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGAC < 1:1171095/50‑1 GTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGAtg < 1:1400251/50‑3 TCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTA < 1:2462571/49‑1 TCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTA < 1:1014819/49‑1 TGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGAC > 1:1900850/1‑50 ACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTG > 1:1081325/1‑50 ACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACT < 1:4206310/49‑1 ACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACT < 1:4112041/49‑1 ACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAG < 1:3978302/46‑1 CCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGT < 1:375615/50‑1 CCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTA < 1:2253012/50‑1 CCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTA > 1:3635247/1‑50 CGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTAT > 1:3510246/1‑49 GCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTA > 1:2112416/1‑50 CATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTA > 1:209282/1‑49 ATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACA < 1:2641946/50‑1 ATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTAC > 1:2581757/1‑49 TAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACA > 1:29231/1‑49 AAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAA > 1:1498942/1‑49 AGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAA < 1:477170/50‑1 AGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAA < 1:896944/49‑1 AGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAA > 1:2214033/1‑48 GGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAG < 1:1853185/50‑1 GAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGC > 1:571268/1‑50 ATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGG > 1:2009036/1‑50 AGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGC > 1:1483786/1‑49 ACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAA > 1:1953879/1‑49 CACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAA < 1:475053/50‑1 CACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAA < 1:542660/50‑1 CACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAA > 1:4347501/1‑48 ACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAG > 1:1200463/1‑50 ACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAG > 1:685661/1‑50 TGCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2509583‑2509630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAG > NC_000913/2517950‑2517998 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |