| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,509,631 | Δ8,319 bp | [yfeO]–pdeA | [yfeO], ypeC, mntH, nupC, insL‑3, pdeA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2509631 | 2517949 | 8319 | 60 [0] | [0] 59 | [yfeO]–pdeA | [yfeO],ypeC,mntH,nupC,insL‑3,pdeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2509630 | 0 (0.000) | 58 (1.000) | 48/98 | 0.0 | 100% | coding (1/1257 nt) | yfeO | putative transport protein YfeO |
| ? | NC_000913 | 2517950 = | 0 (0.000) | intergenic (‑118/+91) | pdeA/alaX | putative c‑di‑GMP phosphodiesterase PdeA/tRNA‑Ala | |||||
AACAGGGGGCCAGCCTGTTGCCGATTTTTCATCCAATGATGCTTTCACCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAG > NC_000913/2517902‑2517998 | tgcaagctgggcaaactaagtatctgaccccgcataaggaatagaacac < 1:326032‑M2/1‑1 (MQ=255) caagctgggcaaactaagtatctgaccccgcataaggaatagaacaCAgg < 1:2853993‑M2/4‑1 (MQ=255) caagctgggcaaactaagtatctgaccccgcataaggaatagaacaCAgg > 1:281793‑M2/47‑50 (MQ=255) caagctgggcaaactaagtatctgaccccgcataaggaatagaacaCAg < 1:3046339‑M2/3‑1 (MQ=255) aagctgggcaaactaagtatctgaccccgcataaggaatagaacaCAggc > 1:303098‑M2/46‑50 (MQ=255) aagctgggcaaactaagtatctgaccccgcataaggaatagaacaCAggc > 1:4390861‑M2/46‑50 (MQ=255) aagctgggcaaactaagtatctgaccccgcataaggaatagaacaCAggc < 1:2495275‑M2/5‑1 (MQ=255) agctgggcaaactaagtatctgaccccgcataaggaatagaacaCAggcg > 1:290723‑M2/45‑50 (MQ=255) agctgggcaaactaagtatctgaccccgcataaggaatagaacaCAggcg < 1:1217605‑M2/6‑1 (MQ=255) agctgggcaaactaagtatctgaccccgcataaggaatagaacaCAggcg > 1:2008165‑M2/45‑50 (MQ=255) gctgggcaaactaagtatctgaccccgcataaggaatagaacaCAggcgg > 1:3931272‑M2/44‑50 (MQ=255) ctgggcaaactaagtatctgaccccgcataaggaatagaacaCAggcgg > 1:2700900‑M2/43‑49 (MQ=255) ctgggcaaactaagtatctgaccccgcataaggaatagaacaCAggcgg > 1:2445841‑M2/43‑49 (MQ=255) tgggcaaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCa > 1:3591913‑M2/42‑50 (MQ=255) ggcaaactaagtatctgaccccgcataaggaatagcacaCAGGCGGCACt < 1:3900734‑M2/11‑1 (MQ=255) ggcaaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCAc > 1:3092484‑M2/40‑49 (MQ=255) ggcaaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCACt < 1:3608705‑M2/11‑1 (MQ=255) gcaaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTa < 1:1861509‑M2/12‑1 (MQ=255) caaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTaa < 1:3807261‑M2/13‑1 (MQ=255) caaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTaa > 1:3611155‑M2/38‑50 (MQ=255) caaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTaa > 1:4139778‑M2/38‑50 (MQ=255) aaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAAc > 1:116401‑M2/37‑50 (MQ=255) aaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAAc < 1:2521432‑M2/14‑1 (MQ=255) aactaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAAcc < 1:209471‑M2/15‑1 (MQ=255) aactaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAAcc > 1:1327296‑M2/36‑50 (MQ=255) agtatctgaccccgcataaggaatagaacaCAGGCGGCACTAACCCGGAc < 1:1171095‑M2/20‑1 (MQ=255) agtatctgaccccgcataaggaatagaacaCAGGCGGCACTAACCCGGAc > 1:4241408‑M2/31‑50 (MQ=255) gtatctgaccccgcataaggaatagaacaCAGGCGGCACTAACCCggatg < 1:1400251‑M2/21‑3 (MQ=255) tctgaccccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTa < 1:1014819‑M2/23‑1 (MQ=255) tctgaccccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTa < 1:2462571‑M2/23‑1 (MQ=255) tgaccccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGAc > 1:1900850‑M2/25‑50 (MQ=255) accccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAg < 1:3978302‑M2/24‑1 (MQ=255) accccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACt < 1:4206310‑M2/27‑1 (MQ=255) accccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACt < 1:4112041‑M2/27‑1 (MQ=255) accccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTg > 1:1081325‑M2/23‑50 (MQ=255) ccccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGt < 1:375615‑M2/29‑1 (MQ=255) cccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTa < 1:2253012‑M2/30‑1 (MQ=255) cccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTa > 1:3635247‑M2/21‑50 (MQ=255) cgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTAt > 1:3510246‑M2/19‑49 (MQ=255) gcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTa > 1:2112416‑M2/18‑50 (MQ=255) cataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTa > 1:209282‑M2/17‑49 (MQ=255) ataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTAc > 1:2581757‑M2/16‑49 (MQ=255) ataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACa < 1:2641946‑M2/35‑1 (MQ=255) taaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACa > 1:29231‑M2/15‑49 (MQ=255) aaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACaa > 1:1498942‑M2/14‑49 (MQ=255) aggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACaaaa < 1:477170‑M2/38‑1 (MQ=255) aggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACaaa < 1:896944‑M2/37‑1 (MQ=255) aggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACaa > 1:2214033‑M2/13‑48 (MQ=255) ggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAg < 1:1853185‑M2/39‑1 (MQ=255) gaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGc > 1:571268‑M2/11‑50 (MQ=255) atagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCgg > 1:2009036‑M2/9‑50 (MQ=255) agaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGc > 1:1483786‑M2/7‑49 (MQ=255) acaCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCaaa > 1:1953879‑M2/4‑49 (MQ=255) caCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCaaaaa < 1:475053‑M2/48‑1 (MQ=255) caCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCaaaaa < 1:542660‑M2/48‑1 (MQ=255) caCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCaaa > 1:4347501‑M2/3‑48 (MQ=255) aCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAg > 1:1200463‑M2/2‑50 (MQ=255) aCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAg > 1:685661‑M2/2‑50 (MQ=255) cAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAg > 1:1951930/1‑49 (MQ=255) | AACAGGGGGCCAGCCTGTTGCCGATTTTTCATCCAATGATGCTTTCACCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAG > NC_000913/2517902‑2517998 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |