| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,618,992 | Δ6,688 bp | rhsB–[yhhJ] | rhsB, yhhH, yhhI, [yhhJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3618992 | 3625679 | 6688 | 51 [0] | [0] 50 | rhsB–[yhhJ] | rhsB,yhhH,yhhI,[yhhJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3618991 | 0 (0.000) | 49 (0.860) | 33/96 | 0.1 | 100% | intergenic (+2/‑201) | nikR/rhsB | DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 | 3625680 = | NA (NA) | coding (1124/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
CGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACAC > NC_000913/3618942‑3619040 | cgcgGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT > 1:362820‑M1/1‑50 (MQ=255) ggcgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtac < 1:1044819‑M1/50‑4 (MQ=255) gTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgc > 1:3756953‑M1/1‑44 (MQ=255) cGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccatt > 1:413214‑M1/1‑41 (MQ=255) ggCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattg < 1:1129702‑M1/50‑11 (MQ=255) aCGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcc < 1:3978975‑M1/50‑14 (MQ=255) aCGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcc > 1:3679195‑M1/1‑37 (MQ=255) aCGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcc > 1:295659‑M1/1‑37 (MQ=255) aCGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcc > 1:2501973‑M1/1‑37 (MQ=255) aCGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcc < 1:2350027‑M1/50‑14 (MQ=255) aCGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcc > 1:2250292‑M1/1‑37 (MQ=255) cGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcc > 1:1962457‑M1/1‑36 (MQ=255) gggCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtccca < 1:295955‑M1/50‑16 (MQ=255) ggCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaa > 1:1212323‑M1/1‑34 (MQ=255) aTTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcg < 1:595581‑M1/50‑20 (MQ=255) aTTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcg < 1:4046921‑M1/50‑20 (MQ=255) gCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtct < 1:545485‑M1/49‑23 (MQ=255) gCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtct < 1:3629083‑M1/49‑23 (MQ=255) cAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttc < 1:843537‑M1/50‑25 (MQ=255) cAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttc > 1:993005‑M1/1‑26 (MQ=255) cAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttc < 1:1922862‑M1/50‑25 (MQ=255) aGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcc > 1:2288949‑M1/1‑25 (MQ=255) aGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcc > 1:1332712‑M1/1‑25 (MQ=255) gTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcct > 1:649633‑M1/1‑24 (MQ=255) gTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcct > 1:3298422‑M1/1‑24 (MQ=255) gCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctg > 1:1644714‑M1/1‑22 (MQ=255) cTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaa > 1:2052341‑M1/1‑21 (MQ=255) gCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatc < 1:4082598‑M1/49‑32 (MQ=255) cGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatcg > 1:1257111‑M1/1‑16 (MQ=255) cGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatcg > 1:143470‑M1/1‑16 (MQ=255) gaaggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcag < 1:4074676‑M1/50‑36 (MQ=255) aaggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcag > 1:1391073‑M1/1‑14 (MQ=255) aaggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcag > 1:1489873‑M1/1‑14 (MQ=255) aggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagca < 1:1195026‑M1/50‑38 (MQ=255) ggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcag < 1:4044999‑M1/50‑39 (MQ=255) ggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcag > 1:3440641‑M1/1‑12 (MQ=255) gaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagc < 1:811310‑M1/50‑40 (MQ=255) gaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagc > 1:2486470‑M1/1‑11 (MQ=255) aagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcg > 1:1344794‑M1/1‑10 (MQ=255) agATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcg > 1:3813010‑M1/1‑9 (MQ=255) agATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcg > 1:1878004‑M1/1‑9 (MQ=255) aTTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaa > 1:4412692‑M1/1‑7 (MQ=255) aTTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaa > 1:655355‑M1/1‑7 (MQ=255) ttGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaat > 1:1770443‑M1/1‑6 (MQ=255) tGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatg > 1:3536784‑M1/1‑5 (MQ=255) tGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatg > 1:82816‑M1/1‑5 (MQ=255) gAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatg < 1:1726384‑M1/49‑46 (MQ=255) gAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatg < 1:184895‑M1/49‑46 (MQ=255) gAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatg < 1:208692‑M1/49‑46 (MQ=255) gTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatggtg < 1:2703186‑M1/50‑49 (MQ=255) ttacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatggtga < 1:2265916‑M1/50‑50 (MQ=255) | CGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACAC > NC_000913/3618942‑3619040 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |