| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,618,992 | Δ6,688 bp | rhsB–[yhhJ] | rhsB, yhhH, yhhI, [yhhJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3618992 | 3625679 | 6688 | 51 [0] | [0] 50 | rhsB–[yhhJ] | rhsB,yhhH,yhhI,[yhhJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3618991 | 0 (0.000) | 49 (0.860) | 33/96 | 0.1 | 100% | intergenic (+2/‑201) | nikR/rhsB | DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 | 3625680 = | NA (NA) | coding (1124/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
GCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGA > NC_000913/3625633‑3625728 | ggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTAc < 1:1044819‑M2/3‑1 (MQ=255) gtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGc > 1:3756953‑M2/45‑49 (MQ=255) cggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCAtt > 1:413214‑M2/42‑50 (MQ=255) ggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTg < 1:1129702‑M2/10‑1 (MQ=255) acgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTcc > 1:2250292‑M2/38‑50 (MQ=255) acgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTcc < 1:2350027‑M2/13‑1 (MQ=255) acgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTcc > 1:2501973‑M2/38‑50 (MQ=255) acgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTcc > 1:295659‑M2/38‑50 (MQ=255) acgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTcc > 1:3679195‑M2/38‑50 (MQ=255) acgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTcc < 1:3978975‑M2/13‑1 (MQ=255) cgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTcc > 1:1962457‑M2/37‑49 (MQ=255) gggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCa < 1:295955‑M2/15‑1 (MQ=255) ggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCaa > 1:1212323‑M2/35‑50 (MQ=255) atttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCg < 1:4046921‑M2/19‑1 (MQ=255) atttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCg < 1:595581‑M2/19‑1 (MQ=255) gcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCt < 1:545485‑M2/22‑1 (MQ=255) gcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCt < 1:3629083‑M2/22‑1 (MQ=255) cagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTc < 1:843537‑M2/24‑1 (MQ=255) cagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTc > 1:993005‑M2/27‑50 (MQ=255) cagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTc < 1:1922862‑M2/24‑1 (MQ=255) agtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTcc > 1:2288949‑M2/26‑50 (MQ=255) agtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTcc > 1:1332712‑M2/26‑50 (MQ=255) gtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCt > 1:649633‑M2/25‑50 (MQ=255) gtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCt > 1:3298422‑M2/25‑50 (MQ=255) gcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTg > 1:1644714‑M2/23‑49 (MQ=255) cttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGaa > 1:2052341‑M2/22‑50 (MQ=255) gccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATc < 1:4082598‑M2/31‑1 (MQ=255) cgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCg > 1:143470‑M2/17‑48 (MQ=255) cgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCg > 1:1257111‑M2/17‑48 (MQ=255) gaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag < 1:4074676‑M2/35‑1 (MQ=255) aaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag > 1:1489873‑M2/15‑49 (MQ=255) aaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag > 1:1391073‑M2/15‑49 (MQ=255) aggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcagca < 1:1195026‑M2/37‑1 (MQ=255) ggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGcagcag > 1:3440641‑M2/13‑50 (MQ=255) ggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGcagcag < 1:4044999‑M2/38‑1 (MQ=255) gaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc < 1:811310‑M2/39‑1 (MQ=255) gaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc > 1:2486470‑M2/12‑50 (MQ=255) aagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcg > 1:1344794‑M2/11‑50 (MQ=255) agattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcg > 1:3813010‑M2/10‑49 (MQ=255) agattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcg > 1:1878004‑M2/10‑49 (MQ=255) attgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:4412692‑M2/8‑50 (MQ=255) attgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:655355‑M2/8‑50 (MQ=255) ttgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAt > 1:1770443‑M2/7‑50 (MQ=255) tgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:3536784‑M2/6‑50 (MQ=255) tgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:82816‑M2/6‑50 (MQ=255) gagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg < 1:208692‑M2/45‑1 (MQ=255) gagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg < 1:1726384‑M2/45‑1 (MQ=255) gagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg < 1:184895‑M2/45‑1 (MQ=255) gtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTg < 1:2703186‑M2/48‑1 (MQ=255) tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGa < 1:2265916‑M2/49‑1 (MQ=255) | GCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGA > NC_000913/3625633‑3625728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |