| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,204,350 | Δ32,368 bp | yehL–preA | 30 genes yehL, yehM, yehP, yehQ, yehR, yehS, btsR, btsS, mlrA, yohO, yehW, yehX, yehY, osmF, bglX, dld, pbpG, yohC, yohD, yohF, mdtQ, yohP, dusC, yohJ, yohK, cdd, sanA, yeiS, preT, preA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2204350 | 2236717 | 32368 | 55 [0] | [0] 54 | yehL–preA | yehL,yehM,yehP,yehQ,yehR,yehS,btsR,btsS,mlrA,yohO,yehW,yehX,yehY,osmF,bglX,dld,pbpG,yohC,yohD,yohF,mdtQ,yohP,dusC,yohJ,yohK,cdd,sanA,yeiS,preT,preA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2204349 | 0 (0.000) | 54 (0.930) | 37/98 | 0.1 | 100% | intergenic (+60/‑247) | yehK/yehL | uncharacterized protein YehK/putative AAA(+) MoxR family ATPase YehL |
| ? | NC_000913 | 2236718 = | 0 (0.000) | intergenic (+218/+25) | preA/mglC | NAD‑dependent dihydropyrimidine dehydrogenase subunit PreA/D‑galactose/methyl‑galactoside ABC transporter membrane subunit | |||||
CCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAG > NC_000913/2236669‑2236766 | taattcaaattggtccgatccggcgcaacgtcccaatggcctggattatt > 1:3825831‑M2/50‑50 (MQ=255)taattcaaattggtccgatccggcgcaacgtcccaatggcctggattatt > 1:3024453‑M2/50‑50 (MQ=255)taattcaaattggtccgatccggcgcaacgtcccaatggcctggattatt > 1:2451644‑M2/50‑50 (MQ=255) aattcaaattggtccgatccggcgcaacgtcccaatggcctggattatt > 1:1120686‑M2/49‑49 (MQ=255) aattcaaattggtccgatccggcgcaacgtcccaatggcctggattatt > 1:465658‑M2/49‑49 (MQ=255) aattcaaattggtccgatccggcgcaacgtcccaatggcctggattatt > 1:2170637‑M2/49‑49 (MQ=255) attcaaattggtccgatccggcgcaacgtcccaatggcctggattatTGa < 1:1914293‑M2/3‑1 (MQ=255) attcaaattggtccgatccggcgcaacgtcccaatggcctggattatTGa > 1:3973495‑M2/48‑50 (MQ=255) attcaaattggtccgatccggcgcaacgtcccaatggcctggattatTGa > 1:2620785‑M2/48‑50 (MQ=255) aattggtccgatccggcgcaacgtcccaatggcctggattatTGACCGaa > 1:1364112‑M2/43‑50 (MQ=255) aattggtccgatccggcgcaacgtcccaatggcctggattatTGACCGaa > 1:2744322‑M2/43‑50 (MQ=255) attggtccgatccggcgcaacgtcccaatggcctggattatTGACCGAAt > 1:4069957‑M2/42‑50 (MQ=255) attggtccgatccggcgcaacgtcccaatggcctggattatTGACCGAAt > 1:2921524‑M2/42‑50 (MQ=255) ggtccgatccggcgcaacgtcccaatggcctggattatTGACCGAATGc < 1:3885451‑M2/11‑1 (MQ=255) ggtccgatccggcgcaacgtcccaatggcctggattatTGACCGAATGc < 1:1499785‑M2/11‑1 (MQ=255) ggtccgatccggcgcaacgtcccaatggcctggattatTGACCGAATGc < 1:3841519‑M2/11‑1 (MQ=255) ggtccgatccggcgcaacgtcccaatggcctggattatTGACCGAATGc < 1:3635168‑M2/11‑1 (MQ=255) gtccgatccggcgcaacgtcccaatggcctggattatTGACCGAATGCg < 1:2697959‑M2/12‑1 (MQ=255) ccgatccggcgcaacgtcccaatggcctggattatTGACCGAATGCGGAc > 1:247133‑M2/36‑50 (MQ=255) cgatccggcgcaacgtcccaatggcctggattatTGACCGAATGCGGAc > 1:3210892‑M2/35‑49 (MQ=255) cgatccggcgcaacgtcccaatggcctggattatTGACCGAATGCGGAc > 1:4335620‑M2/35‑49 (MQ=255) gatccggcgcaacgtcccaatggcctggattatTGACCGAATGCGGACca > 1:4332453‑M2/34‑50 (MQ=255) gatccggcgcaacgtcccaatggcctggattatTGACCGAATGCGGACca > 1:4120943‑M2/34‑50 (MQ=255) gatccggcgcaacgtcccaatggcctggattatTGACCGAATGCGGACca > 1:902871‑M2/34‑50 (MQ=255) atccggcgcaacgtcccaatggcctggattatTGACCGAATGCGGACcac < 1:2425612‑M2/18‑1 (MQ=255) atccggcgcaacgtcccaatggcctggattatTGACCGAATGCGGACca > 1:2100561‑M2/33‑49 (MQ=255) cggcgcaacgtcccaatggcctggattatTGACCGAATGCGGACCACAt < 1:1158547‑M2/20‑1 (MQ=255) ggcgcaacgtcccaatggcctggattatTGACCGAATGCGGACCACAtt > 1:516766‑M2/29‑49 (MQ=255) gcgcaacgtcccaatggcctggattatTGACCGAATGCGGACCACATTca < 1:2116‑M2/23‑1 (MQ=255) cgcaacgtcccaatggcctggattatTGACCGAATGCGGACCACATTcac < 1:3074831‑M2/24‑1 (MQ=255) gcaacgtcccaatggcctggattatTGACCGAATGCGGACCACATTcaca > 1:436055‑M2/26‑50 (MQ=255) cgtcccaatggcctggattatTGACCGAATGCGGACCACATTCAcatcat < 1:4252600‑M2/29‑1 (MQ=255) gtcccaatggcctggattatTGACCGAATGCGGACCACATTCACATCAtt < 1:3503851‑M2/30‑1 (MQ=255) gtcccaatggcctggattatTGACCGAATGCGGACCACATTCACATCAtt > 1:394595‑M2/21‑50 (MQ=255) tcccaatggcctggattatTGACCGAATGCGGACCACATTCACATCAttt < 1:4267217‑M2/31‑1 (MQ=255) ccaatggcctggattatTGACCGAATGCGGACCACATTCACATCATTTc < 1:3994284‑M2/32‑1 (MQ=255) caatggcctggattatTGACCGAATGCGGACCACATTCACATCATTTCt > 1:4430361‑M2/17‑49 (MQ=255) aatggcctggattatTGACCGAATGCGGACCACATTCACATCATTTCTTa > 1:3429603‑M2/16‑50 (MQ=255) aatggcctggattatTGACCGAATGCGGACCACATTCACATCATTTCTTa < 1:1117240‑M2/35‑1 (MQ=255) aatggcctggattatTGACCGAATGCGGACCACATTCACATCATTTCTTa < 1:925026‑M2/35‑1 (MQ=255) atggcctggattatTGACCGAATGCGGACCACATTCACATCATTTCTTAc > 1:1535140‑M2/15‑50 (MQ=255) tggcctggattatTGACCGAATGCGGACCACATTCACATCATTTCTTAcg < 1:1984754‑M2/37‑1 (MQ=255) gcctggattatTGACCGAATGCGGACCACATTCACATCATTTCTTAcgc < 1:3346928‑M2/38‑1 (MQ=255) cctggattatTGACCGAATGCGGACCACATTCACATCATTTCTTAcgcgc < 1:687959‑M2/40‑1 (MQ=255) ctggattatTGACCGAATGCGGACCACATTCACATCATTTCTTAcgcgcg < 1:338282‑M2/41‑1 (MQ=255) ctggattatTGACCGAATGCGGACCACATTCACATCATTTCTTAcgcgcg < 1:2177980‑M2/41‑1 (MQ=255) tggattatTGACCGAATGCGGACCACATTCACATCATTTCTTAcgcgcg > 1:3163931‑M2/9‑49 (MQ=255) tggattatTGACCGAATGCGGACCACATTCACATCATTTCTTAcgcgcg > 1:2553606‑M2/9‑49 (MQ=255) gattatTGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTAt < 1:2076893‑M2/44‑1 (MQ=255) gattatTGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTAt < 1:1267725‑M2/44‑1 (MQ=255) attatTGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTAtt < 1:649241‑M2/45‑1 (MQ=255) atTGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTAttt > 1:557146‑M2/3‑48 (MQ=255) atTGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTc < 1:976461‑M2/47‑1 (MQ=255) tTGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAg < 1:3993846‑M2/49‑1 (MQ=255) | CCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAG > NC_000913/2236669‑2236766 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |