| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,994,992 | Δ3,877 bp | [ygeL]–ygeQ | [ygeL], ygeN, ygeO, insD‑4, insC‑4, ygeP, ygeQ | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2994992 | 2998868 | 3877 | 73 [0] | [0] 69 | [ygeL]–ygeQ | [ygeL],ygeN,ygeO,insD‑4,insC‑4,ygeP,ygeQ |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2994991 | 0 (0.000) | 69 (1.240) | 47/94 | 0.0 | 100% | pseudogene (102/156 nt) | ygeL | protein YgeL |
| ? | NC_000913 | 2998869 = | 0 (0.000) | intergenic (‑41/+115) | ygeQ/glyU | protein YgeQ/tRNA‑Gly | |||||
CCCTTTCATAAAATATTCCATCAATCGTTTGTTAAAAGCGTAGATAACCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTA > NC_000913/2998820‑2998913 | tgtagatttgttacactccgctatagctttcttcagatctttatagccca > 1:243038‑M2/50‑50 (MQ=255)tgtagatttgttacactccgctatagctttcttcagatctttatagccca > 1:736567‑M2/50‑50 (MQ=255) gtagatttgttacactccgctatagctttcttcagatctttatagcccAc > 1:2386764‑M2/49‑50 (MQ=255) gtagatttgttacactccgctatagctttcttcagatctttatagcccAc > 1:4121737‑M2/49‑50 (MQ=255) gtagatttgttacactccgctatagctttcttcagatctttatagcccAc > 1:4242531‑M2/49‑50 (MQ=255) gtagatttgttacactccgctatagctttcttcagatctttatagcccAc > 1:1893558‑M2/49‑50 (MQ=255) tagatttgttacactccgctatagctttcttcagatctttatagccca < 1:4186093‑M2/1‑1 (MQ=255) tagatttgttacactccgctatagctttcttcagatctttatagcccAc < 1:1168242‑M2/2‑1 (MQ=255) tagatttgttacactccgctatagctttcttcagatctttatagcccAc < 1:2613392‑M2/2‑1 (MQ=255) tagatttgttacactccgctatagctttcttcagatctttatagcccACt > 1:3548939‑M2/48‑50 (MQ=255) tagatttgttacactccgctatagctttcttcagatctttatagcccACt > 1:552131‑M2/48‑50 (MQ=255) gatttgttacactccgctatagctttcttcagatctttatagcccACTTa > 1:3058884‑M2/46‑50 (MQ=255) gatttgttacactccgctatagctttcttcagatctttatagcccACTTa < 1:1039788‑M2/5‑1 (MQ=255) tgttacactccgctatagctttcttcagatctttatagcccACTTAttt < 1:18261‑M2/8‑1 (MQ=255) tgttacactccgctatagctttcttcagatctttatagcccACTTAttt < 1:2002378‑M2/8‑1 (MQ=255) gttacactccgctatagctttcttcagatctttatagcccACTTATTTaa > 1:2928188‑M2/41‑50 (MQ=255) ttacactccgctatagctttcttcagatctttatagcccACTTATTTaac < 1:3312705‑M2/11‑1 (MQ=255) ttacactccgctatagctttcttcagatctttatagcccACTTATTTaa > 1:4149002‑M2/40‑49 (MQ=255) ttacactccgctatagctttcttcagatctttatagcccACTTATTTaa < 1:3520690‑M2/10‑1 (MQ=255) ttacactccgctatagctttcttcagatctttatagcccACTTATTTaa > 1:245916‑M2/40‑49 (MQ=255) acactccgctatagctttcttcagatctttatagcccACTTATTTaacaa > 1:150163‑M2/38‑50 (MQ=255) cactccgctatagctttcttcagatctttatagcccACTTATTTaacaac < 1:332128‑M2/14‑1 (MQ=255) ctccgctatagctttcttcagatctttatagcccACTTATTTAACAACtt < 1:4111019‑M2/16‑1 (MQ=255) ccgctatagctttcttcagatctttatagcccACTTATTTAACAACTTg > 1:2126118‑M2/33‑49 (MQ=255) ccgctatagctttcttcagatctttatagcccACTTATTTAACAACTTg > 1:1208175‑M2/33‑49 (MQ=255) cgctatagctttcttcagatctttatagcccACTTATTTAACAACTTGaa < 1:1814158‑M2/19‑1 (MQ=255) cgctatagctttcttcagatctttatagcccACTTATTTAACAACTTGa > 1:1567659‑M2/32‑49 (MQ=255) cgctatagctttcttcagatctttatagcccACTTATTTAACAACTTGa < 1:12431‑M2/18‑1 (MQ=255) cgctatagctttcttcagatctttatagcccACTTATTTAACAACTTGa > 1:138217‑M2/32‑49 (MQ=255) gctatagctttcttcagatctttatagcccACTTATTTAACAACTTGaaa < 1:2139486‑M2/20‑1 (MQ=255) gctatagctttcttcagatctttatagcccACTTATTTAACAACTTGaaa < 1:1638745‑M2/20‑1 (MQ=255) gctatagctttcttcagatctttatagcccACTTATTTAACAACTTGaaa < 1:3813158‑M2/20‑1 (MQ=255) ctatagctttcttcagatctttatagcccACTTATTTAACAACTTGaaaa < 1:2760458‑M2/21‑1 (MQ=255) tatagctttcttcagatctttatagcccACTTATTTAACAACTTGaaaa > 1:676164‑M2/29‑49 (MQ=255) atagctttcttcagatctttatagcccACTTATTTAACAACTTGAAAAt > 1:3944132‑M2/28‑49 (MQ=255) tagctttcttcagatctttatagcccACTTATTTAACAACTTGAAAAt > 1:3560773‑M2/27‑48 (MQ=255) tagctttcttcagatctttatagcccACTTATTTAACAACTTGAAAAt < 1:185573‑M2/22‑1 (MQ=255) tagctttcttcagatctttatagcccACTTATTTAACAACTTGAAAAt < 1:39118‑M2/22‑1 (MQ=255) tagctttcttcagatctttatagcccACTTATTTAACAACTTGAAAATaa < 1:2762807‑M2/24‑1 (MQ=255) tagctttcttcagatctttatagcccACTTATTTAACAACTTGAAAATa < 1:620003‑M2/23‑1 (MQ=255) gctttcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAgg < 1:3179864‑M2/26‑1 (MQ=255) ctttcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGgt > 1:1619007‑M2/24‑50 (MQ=255) tttcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGgtg > 1:2353010‑M2/23‑50 (MQ=255) tcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGgtgt < 1:3135980‑M2/29‑1 (MQ=255) tcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGgtg < 1:4099489‑M2/28‑1 (MQ=255) tcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGtt > 1:1628673‑M2/21‑50 (MQ=255) tcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGtt > 1:1920846‑M2/21‑50 (MQ=255) tcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGtt > 1:3765216‑M2/21‑50 (MQ=255) cttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGttt > 1:968290‑M2/20‑50 (MQ=255) cttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGtt < 1:2613806‑M2/30‑1 (MQ=255) agatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTAc < 1:366774‑M2/34‑1 (MQ=255) agatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTAc < 1:4027807‑M2/34‑1 (MQ=255) agatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTAc < 1:2088096‑M2/34‑1 (MQ=255) gatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCt < 1:2934153‑M2/36‑1 (MQ=255) gatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCt < 1:4397474‑M2/36‑1 (MQ=255) atctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTg > 1:4314270‑M2/14‑50 (MQ=255) ttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgtt > 1:1956082‑M2/10‑50 (MQ=255) ttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgtt > 1:4180396‑M2/10‑50 (MQ=255) tatagcccACTTATTTAACAACTTGAAAATAAGGTGtttt < 1:3871232‑M2/32‑1 (MQ=255) tatagcccACTTATTTAACAACTTGAAAATAAGGTGttt < 1:2759739‑M2/31‑1 (MQ=255) tatagcccACTTATTTAACAACTTGAAAATAAGGTGttt < 1:2608580‑M2/31‑1 (MQ=255) tatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTg < 1:3086352‑M2/37‑1 (MQ=255) atagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgttgt > 1:1937765‑M2/8‑50 (MQ=255) atagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgttgt > 1:1972119‑M2/8‑50 (MQ=255) tagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgttgtt < 1:1831735‑M2/44‑1 (MQ=255) tagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgttgtt < 1:2512801‑M2/44‑1 (MQ=255) tagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgttgt < 1:2227042‑M2/43‑1 (MQ=255) tagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgttgt > 1:3009301‑M2/7‑49 (MQ=255) agcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTa > 1:3732596‑M2/6‑50 (MQ=255) | CCCTTTCATAAAATATTCCATCAATCGTTTGTTAAAAGCGTAGATAACCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTA > NC_000913/2998820‑2998913 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |