| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 49 [0] | [0] 52 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 47 (0.850) +GA |
39/94 | 0.0 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
CCCTGTGTATATATCAAGGCCAACAAATAAATTTAGCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGCA > NC_000913/3136333‑3136431 | ggcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaa > 1:644628‑M2/50‑50 (MQ=255) gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 1:1996824‑M2/2‑1 (MQ=255) ttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:334426‑M2/47‑50 (MQ=255) tcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAt > 1:690755‑M2/44‑50 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCa < 1:1168051‑M2/6‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtt < 1:3614348‑M2/8‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAt < 1:3578971‑M2/7‑1 (MQ=255) gcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtttt < 1:788630‑M2/10‑1 (MQ=255) cagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTg < 1:3113161‑M2/11‑1 (MQ=255) cagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTg < 1:2698015‑M2/11‑1 (MQ=255) agcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGa < 1:1117214‑M2/12‑1 (MQ=255) cactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAt < 1:1369427‑M2/14‑1 (MQ=255) cactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAt > 1:3266070‑M2/37‑50 (MQ=255) actgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAtt < 1:2393988‑M2/15‑1 (MQ=255) ctgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAttt < 1:4073728‑M2/16‑1 (MQ=255) tgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTa > 1:495455‑M2/34‑50 (MQ=255) gacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTAc > 1:887372‑M2/33‑50 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACg < 1:2121550‑M2/19‑1 (MQ=255) catcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACg > 1:3114500‑M2/31‑49 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACgg < 1:1735542‑M2/24‑1 (MQ=255) tttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGAc < 1:2481287‑M2/26‑1 (MQ=255) tttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGAc < 1:541517‑M2/26‑1 (MQ=255) tttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGAc < 1:295902‑M2/26‑1 (MQ=255) tgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACg > 1:2230135‑M2/23‑49 (MQ=255) tgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACg > 1:4077135‑M2/23‑49 (MQ=255) gtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGc < 1:3800215‑M2/28‑1 (MQ=255) gtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCa > 1:2305121‑M2/22‑50 (MQ=255) gtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCa > 1:3770932‑M2/22‑50 (MQ=255) tgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCAt > 1:589152‑M2/21‑50 (MQ=255) tgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCAt < 1:693985‑M2/30‑1 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTa < 1:1566721‑M2/32‑1 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt < 1:1094931‑M2/33‑1 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATc < 1:4313433‑M2/34‑1 (MQ=255) cccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCa < 1:904484‑M2/35‑1 (MQ=255) cccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCa < 1:4145141‑M2/35‑1 (MQ=255) ccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAg < 1:1453240‑M2/36‑1 (MQ=255) cgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGt < 1:3129610‑M2/37‑1 (MQ=255) cgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGt > 1:2881401‑M2/14‑50 (MQ=255) cgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt < 1:939376‑M2/42‑1 (MQ=255) gcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt > 1:1609205‑M2/8‑49 (MQ=255) gcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt > 1:566402‑M2/8‑49 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACttt > 1:647885‑M2/7‑49 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTa < 1:2301576‑M2/44‑1 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTa < 1:4394357‑M2/44‑1 (MQ=255) atagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTaa > 1:1291053‑M2/6‑50 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAc < 1:2998215‑M2/46‑1 (MQ=255) agaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg > 1:1111635‑M2/4‑50 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACgg > 1:3561340‑M2/3‑50 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACgg > 1:800113‑M2/3‑50 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACgg > 1:1043705‑M2/3‑50 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg < 1:3446491‑M2/47‑1 (MQ=255) aCGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGCa < 1:13421/50‑1 (MQ=255) | CCCTGTGTATATATCAAGGCCAACAAATAAATTTAGCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGCA > NC_000913/3136333‑3136431 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |