| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 49 [0] | [0] 52 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 47 (0.850) +GA |
39/94 | 0.0 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
CCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGGTCATTAAACACCACA > NC_000913/3110630‑3110728 | ccAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCata < 1:266862/50‑1 (MQ=255) aGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAg > 1:228746‑M1/1‑48 (MQ=255) ggCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaa > 1:644628‑M1/1‑47 (MQ=255) gCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaac < 1:1996824‑M1/50‑5 (MQ=255) ttCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgc > 1:334426‑M1/1‑44 (MQ=255) tcAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccat > 1:690755‑M1/1‑41 (MQ=255) agcagcACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccatt < 1:3614348‑M1/49‑11 (MQ=255) agcagcACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccat < 1:3578971‑M1/48‑10 (MQ=255) agcagcACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgcca < 1:1168051‑M1/47‑9 (MQ=255) gcagcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccatttt < 1:788630‑M1/50‑13 (MQ=255) cagcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttg < 1:3113161‑M1/50‑14 (MQ=255) cagcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttg < 1:2698015‑M1/50‑14 (MQ=255) agcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttga < 1:1117214‑M1/50‑15 (MQ=255) caCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaat > 1:3266070‑M1/1‑34 (MQ=255) caCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaat < 1:1369427‑M1/50‑17 (MQ=255) aCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatt < 1:2393988‑M1/50‑18 (MQ=255) cTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaattt < 1:4073728‑M1/50‑19 (MQ=255) tGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaattta > 1:495455‑M1/1‑31 (MQ=255) gACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttac > 1:887372‑M1/1‑30 (MQ=255) aCATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacg < 1:2121550‑M1/50‑22 (MQ=255) cATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacg > 1:3114500‑M1/1‑28 (MQ=255) aaTTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacgg < 1:1735542‑M1/50‑27 (MQ=255) tttGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacggac < 1:541517‑M1/50‑29 (MQ=255) tttGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacggac < 1:295902‑M1/50‑29 (MQ=255) tttGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacggac < 1:2481287‑M1/50‑29 (MQ=255) tgtgTCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacg > 1:2230135‑M1/1‑20 (MQ=255) tgtgTCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacg > 1:4077135‑M1/1‑20 (MQ=255) gtgtCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgca > 1:3770932‑M1/1‑19 (MQ=255) gtgtCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgca > 1:2305121‑M1/1‑19 (MQ=255) gtgtCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgc < 1:3800215‑M1/49‑31 (MQ=255) tgtCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcat > 1:589152‑M1/1‑18 (MQ=255) tgtCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcat < 1:693985‑M1/50‑33 (MQ=255) tCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcatta < 1:1566721‑M1/50‑35 (MQ=255) aCCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatc < 1:4313433‑M1/50‑37 (MQ=255) aCCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcattat < 1:1094931‑M1/49‑36 (MQ=255) cccGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatca < 1:4145141‑M1/50‑38 (MQ=255) cccGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatca < 1:904484‑M1/50‑38 (MQ=255) ccGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcag < 1:1453240‑M1/50‑39 (MQ=255) cGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagt < 1:3129610‑M1/50‑40 (MQ=255) cGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagt > 1:2881401‑M1/1‑11 (MQ=255) cgcATAgaacgccattttgaatttacgaacggacgcattatcagtgactt < 1:939376‑M1/50‑45 (MQ=255) gcATAgaacgccattttgaatttacgaacggacgcattatcagtgactt > 1:566402‑M1/1‑5 (MQ=255) gcATAgaacgccattttgaatttacgaacggacgcattatcagtgactt > 1:1609205‑M1/1‑5 (MQ=255) cATAgaacgccattttgaatttacgaacggacgcattatcagtgacttta < 1:4394357‑M1/50‑47 (MQ=255) cATAgaacgccattttgaatttacgaacggacgcattatcagtgacttta < 1:2301576‑M1/50‑47 (MQ=255) cATAgaacgccattttgaatttacgaacggacgcattatcagtgacttt > 1:647885‑M1/1‑4 (MQ=255) aTAgaacgccattttgaatttacgaacggacgcattatcagtgactttaa > 1:1291053‑M1/1‑3 (MQ=255) tAgaacgccattttgaatttacgaacggacgcattatcagtgactttaac < 1:2998215‑M1/50‑49 (MQ=255) agaacgccattttgaatttacgaacggacgcattatcagtgactttaacg > 1:1111635‑M1/1‑1 (MQ=255) | CCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGGTCATTAAACACCACA > NC_000913/3110630‑3110728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |