mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 31 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 380,014 | 0 | G | . | 57.6% | 4.2 / 74.7 | 33 | intergenic (‑133/+55) | frmR/yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| * | NC_000913 | 2,662,004 | 0 | T | C | 56.4% | 23.0 / 79.3 | 55 | E43G (GAA→GGA) | iscR | DNA‑binding transcriptional dual regulator IscR |
| * | NC_000913 | 195,495 | 0 | A | G | 44.2% | 17.6 / 75.9 | 52 | E198G (GAG→GGG) | ispU | undecaprenyl diphosphate synthase |
| * | NC_000913 | 2,316,813 | 0 | G | A | 41.7% | 30.5 / 86.0 | 60 | A213T (GCA→ACA) | rcsB | DNA‑binding transcriptional activator RcsB |
| * | NC_000913 | 4,606,331 | 0 | A | G | 41.0% | 21.2 / 47.5 | 39 | noncoding (71/87 nt) | leuQ | tRNA‑Leu |
| * | NC_000913 | 2,872,825 | 0 | C | . | 38.9% | 124.6 / 92.1 | 54 | intergenic (‑5/+189) | ftsB/ygbE | cell division protein FtsB/conserved inner membrane protein YgbE |
| * | NC_000913 | 4,296,060 | 0 | C | T | 38.7% | 102.3 / 150.5 | 119 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 1,715,296 | 0 | C | T | 35.9% | 71.2 / 46.4 | 53 | L198L (CTG→CTA) | pdxY | pyridoxal kinase 2 |
| * | NC_000913 | 3,815,801 | 0 | A | . | 35.3% | 134.5 / 70.3 | 51 | intergenic (‑33/+62) | pyrE/rph | orotate phosphoribosyltransferase/truncated RNase PH |
| * | NC_000913 | 1,653,007 | 0 | T | C | 34.0% | 62.8 / 51.3 | 50 | P303P (CCA→CCG) | rspB | putative zinc‑binding dehydrogenase RspB |
| * | NC_000913 | 2,029,274 | 0 | C | T | 33.3% | 81.4 / 26.5 | 54 | K31K (AAG→AAA) | yedI | conserved inner membrane protein YedI |
| * | NC_000913 | 657,900 | 0 | A | C | 30.9% | 87.5 / 10.1 | 42 | G13G (GGT→GGG) | crcB | F(‑) channel |
| * | NC_000913 | 1,245,234 | 0 | G | T | 30.8% | 141.6 / 22.4 | 65 | L25F (TTG→TTT) | ycgY | uncharacterized protein YcgY |
| * | NC_000913 | 2,483,268 | 0 | T | A | 30.4% | 100.2 / 14.7 | 46 | L24F (TTA→TTT) | emrK | tripartite efflux pump membrane fusion protein EmrK |
| * | NC_000913 | 3,926,760 | 0 | A | G | 30.4% | 124.4 / 73.5 | 79 | Y82H (TAC→CAC) | asnC | DNA‑binding transcriptional dual regulator AsnC |
| * | NC_000913 | 3,508,657 | 0 | A | G | 30.2% | 92.8 / 10.5 | 43 | F386S (TTC→TCC) | yhfW | putative mutase YhfW |
| * | NC_000913 | 3,813,272 | 0 | C | T | 30.0% | 100.3 / 15.4 | 50 | S181L (TCG→TTG) | dfp | fused 4'‑phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase |
| * | NC_000913 | 3,508,650 | 0 | C | G | 29.7% | 58.0 / 14.2 | 37 | A388A (GCG→GCC) | yhfW | putative mutase YhfW |
| * | NC_000913 | 1,825,061 | 0 | G | A | 27.9% | 96.2 / 16.6 | 43 | intergenic (‑124/+79) | ves/spy | HutD family protein Ves/ATP‑independent periplasmic chaperone |
| * | NC_000913 | 34,111 | 1 | . | T | 27.8% | 88.8 / 80.5 | 54 | intergenic (+73/‑189) | carB/caiF | carbamoyl phosphate synthetase subunit beta/DNA‑binding transcriptional activator CaiF |