| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 136 [0] | [0] 133 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 0 (0.000) | 127 (1.140) | 71/96 | 0.0 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
Only 100 of 136 total aligned reads displayed.
CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2320094‑2320143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > NC_000913/2336633‑2336681 CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT > 1:4610887/1‑50CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT > 1:3581823/1‑50 TGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATT > 1:528347/1‑50 TGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATT > 1:5548314/1‑50 TGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATT > 1:7304201/1‑50 TGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATT > 1:2611841/1‑50 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTC < 1:4899780/50‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTC < 1:772336/50‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT < 1:8429979/49‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATT < 1:5754718/48‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATT < 1:653743/48‑1 GCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACC < 1:6851015/50‑1 GCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACC < 1:6255695/50‑1 GCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCAC < 1:6751558/49‑1 CAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCA < 1:1682584/50‑1 CAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCA < 1:6190822/50‑1 CAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCA < 1:6393413/50‑1 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCAC > 1:5625547/1‑50 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCAC < 1:4135505/50‑1 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCAC > 1:3898302/1‑50 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCAC > 1:6617666/1‑50 TCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTC < 1:7510220/50‑1 TCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACT > 1:400190/1‑49 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCAT < 1:5007656/50‑1 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCAT > 1:1704234/1‑50 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCA < 1:5733743/49‑1 TGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATT > 1:8126074/1‑50 GATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTG > 1:7911750/1‑50 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATT < 1:538423/48‑1 TGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCC < 1:645654/50‑1 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCAC < 1:7014502/50‑1 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCAC < 1:8286687/50‑1 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCAC < 1:7129584/50‑1 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCA > 1:2991313/1‑49 ATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATT > 1:2118839/1‑50 ATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATT < 1:157541/50‑1 TTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTC > 1:7938723/1‑50 TCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTT < 1:1761261/50‑1 TCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTT < 1:7592372/50‑1 CCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGT > 1:3603805/1‑50 CCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGT > 1:8252100/1‑50 CCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGT < 1:2887833/50‑1 CCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGT < 1:8117407/50‑1 CCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTG < 1:4777701/49‑1 CCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTG < 1:3100841/49‑1 CAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG < 1:964779/50‑1 CAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG > 1:5036098/1‑50 CAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG < 1:3748668/50‑1 CAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG < 1:4578802/50‑1 AACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGT < 1:2489016/50‑1 AACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGT < 1:4780911/50‑1 AACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGT < 1:7081678/50‑1 AACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG > 1:1632862/1‑49 AACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG > 1:5847143/1‑49 ACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA > 1:3609286/1‑50 ACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA < 1:228558/50‑1 ACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA > 1:5503538/1‑50 CGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTAT < 1:7273654/50‑1 CGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA > 1:905710/1‑49 GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATA < 1:6293511/50‑1 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG > 1:6925278/1‑50 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG < 1:3906740/50‑1 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG < 1:1392220/50‑1 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG < 1:6842373/50‑1 TTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:3759819/1‑50 TTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:5349708/1‑50 TACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:2863780/1‑49 TACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:3433573/1‑49 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCC < 1:3883474/49‑1 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC < 1:7989683/48‑1 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:4648919/1‑48 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC < 1:5178078/48‑1 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:2528893/1‑48 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC < 1:2198454/48‑1 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:3955291/1‑48 TATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGC > 1:5732373/1‑50 ATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGC > 1:1393292/1‑49 ATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGC > 1:4071258/1‑49 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCA > 1:7034815/1‑50 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCA < 1:6633107/50‑1 GGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATT > 1:5891260/1‑50 GGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAT < 1:6895530/49‑1 GGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAT < 1:857962/49‑1 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTT > 1:8387932/1‑50 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTT < 1:8281944/50‑1 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTT > 1:4793046/1‑50 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATT < 1:1082928/49‑1 TTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTT < 1:2353687/50‑1 TTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTT > 1:8050880/1‑50 TTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTT < 1:7271036/50‑1 TTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTT > 1:6915269/1‑50 TTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTT > 1:3748821/1‑50 ATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT > 1:3454231/1‑49 TATTTCGCCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTT < 1:7288623/49‑1 TATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTA > 1:1692858/1‑50 ATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAC > 1:4186487/1‑50 TTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > 1:2891598/1‑50 TTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG < 1:3335044/50‑1 TTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAC < 1:1853054/49‑1 TTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAC < 1:5199836/49‑1 CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2320094‑2320143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > NC_000913/2336633‑2336681 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |