| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 136 [0] | [0] 133 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 0 (0.000) | 127 (1.140) | 71/96 | 0.0 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
Only 100 of 133 total aligned reads displayed.
TTGCGCCAAAACCTACAAGACCATAGAACCGCCAGCCTTTCGCCTTTTTTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > NC_000913/2336584‑2336681 | tgatggcaatcctgatggtcattgtcccaacgcttactattggttatatt > 1:2611841‑M2/50‑50 (MQ=255)tgatggcaatcctgatggtcattgtcccaacgcttactattggttatatt > 1:5548314‑M2/50‑50 (MQ=255)tgatggcaatcctgatggtcattgtcccaacgcttactattggttatatt > 1:528347‑M2/50‑50 (MQ=255)tgatggcaatcctgatggtcattgtcccaacgcttactattggttatatt > 1:7304201‑M2/50‑50 (MQ=255) atggcaatcctgatggtcattgtcccaacgcttactattggttatattt < 1:8429979‑M2/2‑1 (MQ=255) atggcaatcctgatggtcattgtcccaacgcttactattggttatatt < 1:653743‑M2/1‑1 (MQ=255) atggcaatcctgatggtcattgtcccaacgcttactattggttatatTTc < 1:4899780‑M2/3‑1 (MQ=255) atggcaatcctgatggtcattgtcccaacgcttactattggttatatTTc < 1:772336‑M2/3‑1 (MQ=255) tggcaatcctgatggtcattgtcccaacgcttactattggttatatTTca > 1:5048834‑M2/47‑50 (MQ=255) gcaatcctgatggtcattgtcccaacgcttactattggttatatTTcacc < 1:6851015‑M2/6‑1 (MQ=255) gcaatcctgatggtcattgtcccaacgcttactattggttatatTTcacc < 1:6255695‑M2/6‑1 (MQ=255) gcaatcctgatggtcattgtcccaacgcttactattggttatatTTcac < 1:3568140‑M2/5‑1 (MQ=255) gcaatcctgatggtcattgtcccaacgcttactattggttatatTTcac < 1:6751558‑M2/5‑1 (MQ=255) gcaatcctgatggtcattgtcccaacgcttactattggttatatTTcac > 1:1471394‑M2/45‑49 (MQ=255) caatcctgatggtcattgtcccaacgcttactattggttatatTTcacca < 1:6393413‑M2/7‑1 (MQ=255) caatcctgatggtcattgtcccaacgcttactattggttatatTTcacca < 1:8032729‑M2/7‑1 (MQ=255) caatcctgatggtcattgtcccaacgcttactattggttatatTTcacca > 1:4822952‑M2/44‑50 (MQ=255) caatcctgatggtcattgtcccaacgcttactattggttatatTTcacca < 1:1682584‑M2/7‑1 (MQ=255) aatcctgatggtcattgtcccaacgcttactattggttatatTTcaccac < 1:4135505‑M2/8‑1 (MQ=255) aatcctgatggtcattgtcccaacgcttactattggttatatTTcaccac > 1:6617666‑M2/43‑50 (MQ=255) aatcctgatggtcattgtcccaacgcttactattggttatatTTcaccac > 1:3898302‑M2/43‑50 (MQ=255) atcctgatggtcattgtcccaacgcttactattggttatatTTCACCACt > 1:4189559‑M2/42‑50 (MQ=255) tcctgatggtcattgtcccaacgcttactattggttatatTTCACCACt > 1:400190‑M2/41‑49 (MQ=255) tcctgatggtcattgtcccaacgcttactattggttatatTTCACCACTc < 1:7510220‑M2/10‑1 (MQ=255) ctgatggtcattgtcccaacgcttactattggttatatTTCACCACTCa < 1:5733743‑M2/11‑1 (MQ=255) ctgatggtcattgtcccaacgcttactattggttatatTTCACCACTCAt > 1:7105432‑M2/39‑50 (MQ=255) ctgatggtcattgtcccaacgcttactattggttatatTTCACCACTCAt > 1:1704234‑M2/39‑50 (MQ=255) gatggtcattgtcccaacgcttactattggttatatTTCACCACTCATTg > 1:7911750‑M2/37‑50 (MQ=255) atggtcattgtcccaacgcttactattggttatatTTCACCACTCATTg < 1:566954‑M2/14‑1 (MQ=255) tggtcattgtcccaacgcttactattggttatatTTCACCACTCATTGcc < 1:645654‑M2/16‑1 (MQ=255) tggtcattgtcccaacgcttactattggttatatTTCACCACTCATTGc > 1:8296992‑M2/35‑49 (MQ=255) gtcattgtcccaacgcttactattggttatatTTCACCACTCATTGCca > 1:2991313‑M2/33‑49 (MQ=255) attgtcccaacgcttactattggttatatTTCACCACTCATTGCCACAtt > 1:2118839‑M2/30‑50 (MQ=255) ttgtcccaacgcttactattggttatatTTCACCACTCATTGCCACATTc > 1:7938723‑M2/29‑50 (MQ=255) tcccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCtt < 1:1761261‑M2/25‑1 (MQ=255) ccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtgt > 1:3603805‑M2/24‑50 (MQ=255) ccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtgt < 1:2980199‑M2/27‑1 (MQ=255) ccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtgt < 1:8117407‑M2/27‑1 (MQ=255) ccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtgt > 1:8252100‑M2/24‑50 (MQ=255) ccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtg < 1:4777701‑M2/26‑1 (MQ=255) caacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtgtg < 1:964779‑M2/28‑1 (MQ=255) caacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtgtg > 1:5036098‑M2/23‑50 (MQ=255) caacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtgtg < 1:3748668‑M2/28‑1 (MQ=255) aacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtgtg > 1:1632862‑M2/22‑49 (MQ=255) aacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtgtg > 1:5847143‑M2/22‑49 (MQ=255) aacgcttactattggttatatTTCACCACTCATTGCCACATTCCTTgtgt < 1:2489016‑M2/29‑1 (MQ=255) aacgcttactattggttatatTTCACCACTCATTGCCACATTCCTTgtgt < 1:7081678‑M2/29‑1 (MQ=255) aacgcttactattggttatatTTCACCACTCATTGCCACATTCCTTgtgt < 1:5221120‑M2/29‑1 (MQ=255) acgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGta < 1:4696935‑M2/30‑1 (MQ=255) acgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGta > 1:3609286‑M2/21‑50 (MQ=255) acgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGta > 1:5503538‑M2/21‑50 (MQ=255) cgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGtat < 1:7273654‑M2/31‑1 (MQ=255) cgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGta > 1:905710‑M2/20‑49 (MQ=255) cgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGta > 1:7522280‑M2/20‑49 (MQ=255) gcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGtata < 1:6293511‑M2/32‑1 (MQ=255) cttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATag > 1:6925278‑M2/18‑50 (MQ=255) cttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATag < 1:1392220‑M2/33‑1 (MQ=255) cttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATag < 1:6842373‑M2/33‑1 (MQ=255) cttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATag > 1:2849743‑M2/18‑50 (MQ=255) cttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATag < 1:3906740‑M2/33‑1 (MQ=255) ttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagc > 1:3759819‑M2/17‑50 (MQ=255) ttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagc > 1:5349708‑M2/17‑50 (MQ=255) tactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagc > 1:3433573‑M2/16‑49 (MQ=255) tactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagc > 1:2863780‑M2/16‑49 (MQ=255) actattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagcc < 1:3883474‑M2/35‑1 (MQ=255) actattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagc > 1:3955291‑M2/15‑48 (MQ=255) actattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagc < 1:5178078‑M2/34‑1 (MQ=255) actattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagc > 1:4648919‑M2/15‑48 (MQ=255) actattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagc < 1:2198454‑M2/34‑1 (MQ=255) ctattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagcca < 1:6952502‑M2/36‑1 (MQ=255) tattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccagc > 1:5732373‑M2/13‑50 (MQ=255) attggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccagc > 1:4071258‑M2/12‑49 (MQ=255) attggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccagc > 1:5386060‑M2/12‑49 (MQ=255) attggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccagc > 1:1393292‑M2/12‑49 (MQ=255) ttggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccagcc < 1:2388548‑M2/39‑1 (MQ=255) ttggttatatTTCACCACTCATTGCCACATTCCTTGTGTATAgccagcca > 1:7034815‑M2/11‑50 (MQ=255) ttggttatatTTCACCACTCATTGCCACATTCCTTGTGTATAgccagcca < 1:6633107‑M2/40‑1 (MQ=255) ttggttatatTTCACCACTCATTGCCACATTCCTTGTGTATAgccagcca > 1:2254839‑M2/11‑50 (MQ=255) tggttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAt > 1:1684277‑M2/10‑50 (MQ=255) ggttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtt > 1:5891260‑M2/9‑50 (MQ=255) ggttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAt < 1:6895530‑M2/41‑1 (MQ=255) gttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAttt < 1:8281944‑M2/43‑1 (MQ=255) gttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAttt > 1:4793046‑M2/8‑50 (MQ=255) gttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAttt > 1:8387932‑M2/8‑50 (MQ=255) gttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAttt > 1:3416540‑M2/8‑50 (MQ=255) gttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtt < 1:8169294‑M2/42‑1 (MQ=255) gttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtt < 1:5799815‑M2/42‑1 (MQ=255) gttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtt < 1:1082928‑M2/42‑1 (MQ=255) ttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtttt < 1:2353687‑M2/44‑1 (MQ=255) ttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtttt < 1:7271036‑M2/44‑1 (MQ=255) ttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtttt > 1:6915269‑M2/7‑50 (MQ=255) ttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtttt > 1:8050880‑M2/7‑50 (MQ=255) ttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtttt > 1:3748821‑M2/7‑50 (MQ=255) tatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAttttt > 1:1847817‑M2/6‑50 (MQ=255) atatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAttttt < 1:7285725‑M2/45‑1 (MQ=255) atatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAttttt < 1:6240735‑M2/45‑1 (MQ=255) atTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAc > 1:4186487‑M2/3‑50 (MQ=255) tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACg > 1:2891598‑M2/2‑50 (MQ=255) tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACg < 1:3335044‑M2/49‑1 (MQ=255) tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACg < 1:8613114‑M2/49‑1 (MQ=255) | TTGCGCCAAAACCTACAAGACCATAGAACCGCCAGCCTTTCGCCTTTTTTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > NC_000913/2336584‑2336681 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |