| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,756,160 | Δ35,091 bp | [intA]–[lhgO] | 33 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjV, yfjW, ypjI, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, pinH, ypjB, ypjC, ileY, ygaQ, csiD, [lhgO] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2756160 | 2791250 | 35091 | 141 [0] | [0] 140 | [intA]–[lhgO] | [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756159 | 0 (0.000) | 134 (1.200) | 65/96 | 0.0 | 100% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 0 (0.000) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
Only 100 of 141 total aligned reads displayed.
AACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2756109‑2756159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC > NC_000913/2791251‑2791299 AACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA < 1:3034528/50‑1AACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA > 1:4699729/1‑50AACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA > 1:8287030/1‑50AACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA > 1:8222760/1‑50 ACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAC < 1:8588908/50‑1 CGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACC < 1:6837669/50‑1 GAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT > 1:2791353/1‑50 GAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT > 1:3765112/1‑50 GAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT > 1:1172102/1‑50 GAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT > 1:2588580/1‑50 AAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTT > 1:8043754/1‑50 AAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTT > 1:3394441/1‑50 AAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTT > 1:4849961/1‑50 AAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT < 1:6348665/50‑1 AAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT > 1:6084518/1‑50 AAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT < 1:4999513/50‑1 AAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTG < 1:748208/50‑1 AAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT > 1:2725441/1‑49 AGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGA < 1:3801553/50‑1 GCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAA < 1:1923394/50‑1 GCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAA < 1:4687702/50‑1 CTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAA > 1:6742177/1‑49 CTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAA > 1:7766412/1‑49 TCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA > 1:3529823/1‑50 CTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA > 1:2600041/1‑49 CTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA > 1:8281549/1‑49 CTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA > 1:290853/1‑49 TATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA > 1:4416685/1‑48 TATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA > 1:8595178/1‑48 ATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAG > 1:4287978/1‑50 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAG > 1:7922561/1‑49 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACA < 1:1083328/48‑1 TGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGA > 1:6298893/1‑50 TGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGA > 1:2294972/1‑50 GTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT > 1:3061442/1‑50 GTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGA < 1:2442267/49‑1 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG > 1:3562456/1‑50 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG > 1:5953325/1‑50 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG > 1:2069380/1‑50 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT < 1:3282902/49‑1 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT < 1:7272904/49‑1 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT < 1:3669470/49‑1 TACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGT < 1:1768749/49‑1 TACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGT < 1:3808868/49‑1 TACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG > 1:3270239/1‑48 ACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAG > 1:3859117/1‑50 ACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAG > 1:6989322/1‑50 ACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTA < 1:1042824/49‑1 ACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTA < 1:6504675/49‑1 ACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTA < 1:8066311/49‑1 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC < 1:7595958/50‑1 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAG < 1:4981389/49‑1 GTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCG < 1:1261694/50‑1 GTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC > 1:134076/1‑49 TTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGA < 1:14239/50‑1 ggCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATG > 1:8372183/3‑49 ggCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATG < 1:5319765/47‑1 gCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAA < 1:5160151/49‑1 gCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAA < 1:5425031/49‑1 gCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAA < 1:5388664/49‑1 gCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAA < 1:3765945/49‑1 gCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGA > 1:3655526/2‑49 CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAA < 1:553544/50‑1 CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAA < 1:7727525/50‑1 CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAA < 1:7563236/50‑1 CTAAACGCAGGGAGACTCCCCACAATTGAAAACAGGATGTAGCGATGAAA > 1:2785850/1‑50 TAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAAC > 1:1248418/1‑50 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACT > 1:6488521/1‑49 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAAC < 1:6961276/48‑1 ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTA < 1:5688357/50‑1 ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTA < 1:3713338/50‑1 ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTT > 1:1912431/1‑49 CGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAA < 1:2736238/50‑1 CGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAA < 1:6623490/50‑1 CGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAA < 1:343604/50‑1 CGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAA > 1:1591764/1‑50 GCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAAC < 1:2171968/50‑1 CAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAAC > 1:1705904/1‑49 CAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAAC > 1:2064632/1‑49 AGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA > 1:1730540/1‑50 AGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA > 1:8248901/1‑50 GGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGAC < 1:827737/50‑1 GGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA > 1:7811/1‑49 GGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA > 1:6450044/1‑48 GAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAG < 1:8342032/50‑1 AGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGT < 1:7973565/50‑1 GACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGT > 1:741344/1‑49 GACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGT > 1:1034283/1‑49 ACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAA < 1:3458782/50‑1 ACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAA > 1:5636035/1‑50 CTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAAC < 1:1319530/50‑1 CCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACT > 1:8049532/1‑49 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTA > 1:39036/1‑50 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTA > 1:2632500/1‑50 CCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAT < 1:4522171/50‑1 CACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT < 1:392224/50‑1 CACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT > 1:4012153/1‑50 CACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT > 1:7238356/1‑50 CACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT > 1:7396230/1‑50 ACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC > 1:4100020/1‑50 AACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2756109‑2756159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC > NC_000913/2791251‑2791299 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |