| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,756,160 | Δ35,091 bp | [intA]–[lhgO] | 33 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjV, yfjW, ypjI, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, pinH, ypjB, ypjC, ileY, ygaQ, csiD, [lhgO] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2756160 | 2791250 | 35091 | 141 [0] | [0] 140 | [intA]–[lhgO] | [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756159 | 0 (0.000) | 134 (1.200) | 65/96 | 0.0 | 100% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 0 (0.000) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
Only 100 of 141 total aligned reads displayed.
AACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAA > NC_000913/2756109‑2756208 | aaCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA < 1:3034528‑M1/50‑1 (MQ=255)aaCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA > 1:4699729‑M1/1‑50 (MQ=255)aaCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA > 1:8287030‑M1/1‑50 (MQ=255)aaCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA > 1:8222760‑M1/1‑50 (MQ=255) aCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAc < 1:8588908‑M1/50‑2 (MQ=255) cGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcc < 1:6837669‑M1/50‑3 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct > 1:2791353‑M1/1‑47 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct > 1:3765112‑M1/1‑47 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct > 1:1172102‑M1/1‑47 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct > 1:2588580‑M1/1‑47 (MQ=255) aaaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctt > 1:8043754‑M1/1‑46 (MQ=255) aaaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctt > 1:3394441‑M1/1‑46 (MQ=255) aaaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctt > 1:4849961‑M1/1‑46 (MQ=255) aaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt < 1:6348665‑M1/50‑6 (MQ=255) aaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt > 1:6084518‑M1/1‑45 (MQ=255) aaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt < 1:4999513‑M1/50‑6 (MQ=255) aaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttg < 1:748208‑M1/50‑7 (MQ=255) aaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt > 1:2725441‑M1/1‑44 (MQ=255) aGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttga < 1:3801553‑M1/50‑8 (MQ=255) gCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaa < 1:1923394‑M1/50‑9 (MQ=255) gCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaa < 1:4687702‑M1/50‑9 (MQ=255) ctctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaa > 1:6742177‑M1/1‑41 (MQ=255) ctctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaa > 1:7766412‑M1/1‑41 (MQ=255) tctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa > 1:3529823‑M1/1‑40 (MQ=255) ctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa > 1:2600041‑M1/1‑39 (MQ=255) ctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa > 1:8281549‑M1/1‑39 (MQ=255) ctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa > 1:290853‑M1/1‑39 (MQ=255) tATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa > 1:4416685‑M1/1‑38 (MQ=255) tATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa > 1:8595178‑M1/1‑38 (MQ=255) aTTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacag > 1:4287978‑M1/1‑37 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacag > 1:7922561‑M1/1‑36 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaaca < 1:1083328‑M1/48‑13 (MQ=255) tGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacagga > 1:6298893‑M1/1‑35 (MQ=255) tGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacagga > 1:2294972‑M1/1‑35 (MQ=255) gTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggat > 1:3061442‑M1/1‑34 (MQ=255) gTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacagga < 1:2442267‑M1/49‑16 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg > 1:3562456‑M1/1‑33 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg > 1:5953325‑M1/1‑33 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg > 1:2069380‑M1/1‑33 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggat < 1:3282902‑M1/49‑17 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggat < 1:7272904‑M1/49‑17 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggat < 1:3669470‑M1/49‑17 (MQ=255) tACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgt < 1:1768749‑M1/49‑19 (MQ=255) tACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgt < 1:3808868‑M1/49‑19 (MQ=255) tACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg > 1:3270239‑M1/1‑31 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtag > 1:3859117‑M1/1‑30 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtag > 1:6989322‑M1/1‑30 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgta < 1:1042824‑M1/49‑20 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgta < 1:6504675‑M1/49‑20 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgta < 1:8066311‑M1/49‑20 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc < 1:7595958‑M1/50‑22 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtag < 1:4981389‑M1/49‑21 (MQ=255) gTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcg < 1:1261694‑M1/50‑23 (MQ=255) gTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc > 1:134076‑M1/1‑28 (MQ=255) ttGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcga < 1:14239‑M1/50‑24 (MQ=255) ggctaAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatg > 1:8372183‑M1/3‑24 (MQ=255) ggctaAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatg < 1:5319765‑M1/47‑26 (MQ=255) gctAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaa < 1:5160151‑M1/49‑28 (MQ=255) gctAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaa < 1:5425031‑M1/49‑28 (MQ=255) gctAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaa < 1:5388664‑M1/49‑28 (MQ=255) gctAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaa < 1:3765945‑M1/49‑28 (MQ=255) gctAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatga > 1:3655526‑M1/2‑23 (MQ=255) cTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaa < 1:553544‑M1/50‑29 (MQ=255) cTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaa < 1:7727525‑M1/50‑29 (MQ=255) cTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaa < 1:7563236‑M1/50‑29 (MQ=255) cTAAACGCAGGGAGACTCCCCAcaattgaaaacaggatgtagcgatgaaa > 1:2785850‑M1/1‑22 (MQ=255) tAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaac > 1:1248418‑M1/1‑21 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaact > 1:6488521‑M1/1‑19 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaac < 1:6961276‑M1/48‑30 (MQ=255) aCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactta < 1:5688357‑M1/50‑33 (MQ=255) aCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactta < 1:3713338‑M1/50‑33 (MQ=255) aCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactt > 1:1912431‑M1/1‑18 (MQ=255) cGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaa < 1:2736238‑M1/50‑34 (MQ=255) cGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaa < 1:6623490‑M1/50‑34 (MQ=255) cGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaa < 1:343604‑M1/50‑34 (MQ=255) cGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaa > 1:1591764‑M1/1‑17 (MQ=255) gCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac < 1:2171968‑M1/50‑35 (MQ=255) cAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac > 1:1705904‑M1/1‑15 (MQ=255) cAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac > 1:2064632‑M1/1‑15 (MQ=255) aGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga > 1:1730540‑M1/1‑14 (MQ=255) aGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga > 1:8248901‑M1/1‑14 (MQ=255) gggAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgac < 1:827737‑M1/50‑38 (MQ=255) gggAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga > 1:7811‑M1/1‑13 (MQ=255) ggAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga > 1:6450044‑M1/1‑12 (MQ=255) gagaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacag < 1:8342032‑M1/50‑40 (MQ=255) agaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagt < 1:7973565‑M1/50‑41 (MQ=255) gaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagt > 1:741344‑M1/1‑9 (MQ=255) gaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagt > 1:1034283‑M1/1‑9 (MQ=255) aCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaa < 1:3458782‑M1/50‑43 (MQ=255) aCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaa > 1:5636035‑M1/1‑8 (MQ=255) cTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaac < 1:1319530‑M1/50‑44 (MQ=255) ccccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaact > 1:8049532‑M1/1‑5 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactta > 1:39036‑M1/1‑4 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactta > 1:2632500‑M1/1‑4 (MQ=255) ccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttat < 1:4522171‑M1/50‑48 (MQ=255) cAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttatt < 1:392224‑M1/50‑49 (MQ=255) cAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttatt > 1:4012153‑M1/1‑2 (MQ=255) cAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttatt > 1:7238356‑M1/1‑2 (MQ=255) cAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttatt > 1:7396230‑M1/1‑2 (MQ=255) acctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttattc > 1:4100020‑M1/1‑1 (MQ=255) | AACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAA > NC_000913/2756109‑2756208 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |