| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,846,301 | Δ20,968 bp | [hycE]–[rpoS] | 21 genes [hycE], hycD, hycC, hycB, hycA, hypA, hypB, hypC, hypD, hypE, fhlA, ygbA, mutS, pphB, ygbI, ygbJ, ygbK, ygbL, ygbM, ygbN, [rpoS] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2846301 | 2867268 | 20968 | 143 [0] | [0] 144 | [hycE]–[rpoS] | [hycE],hycD,hycC,hycB,hycA,hypA,hypB,hypC,hypD,hypE,fhlA,ygbA,mutS,pphB,ygbI,ygbJ,ygbK,ygbL,ygbM,ygbN,[rpoS] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 0 (0.000) | 135 (1.260) | 73/92 | 0.0 | 100% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
Only 100 of 150 total aligned reads displayed.
AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846249‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAA > NC_000913/2867269‑2867317 AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 1:5230164/1‑50AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 1:7684691/1‑50 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCG < 1:2127643/50‑1 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 1:2844753/1‑49 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 1:6751938/1‑49 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC < 1:1591016/49‑1 CGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAT > 1:124924/1‑50 CGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAT < 1:5714213/50‑1 CGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAT > 1:2324889/1‑50 GGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATC < 1:254837/50‑1 GGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAT > 1:5276516/1‑49 GGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAT > 1:3389704/1‑49 GCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCA > 1:4930160/1‑50 CGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCAT < 1:4160351/50‑1 CGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCAT > 1:4046619/1‑50 GTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATC > 1:8215835/1‑50 GTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATC > 1:1353487/1‑50 TAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCC < 1:7682901/50‑1 TAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCC > 1:3517796/1‑50 TAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCC < 1:6132856/50‑1 TAATGACCATTCAG‑TTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG > 1:6484204/1‑50 AATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG > 1:6270087/1‑50 AATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG > 1:7898977/1‑50 AATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG > 1:7021560/1‑50 AATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG > 1:957166/1‑50 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGG < 1:403582/50‑1 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGG > 1:6620564/1‑50 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGG > 1:2454014/1‑50 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGG > 1:2212914/1‑50 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGG < 1:5745532/50‑1 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGG > 1:1925613/1‑50 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG < 1:591815/49‑1 ATGACCATGCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGG < 1:2671177/50‑1 TGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGC > 1:6264733/1‑50 ACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGG < 1:6310313/50‑1 ACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGG > 1:3942963/1‑50 ACCACTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCG < 1:5763343/49‑1 CATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:3167075/1‑49 ATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGA < 1:4229269/50‑1 ATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:6915972/1‑48 TTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:1507789/1‑47 TTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:8314017/1‑47 TCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGA > 1:7531171/1‑48 CAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAG > 1:637081/1‑50 CAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAG > 1:7722716/1‑50 AGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGCGG > 1:5485359/1‑50 AGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGG < 1:1799287/50‑1 AGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAG < 1:7349156/49‑1 GTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGC < 1:3876908/50‑1 TGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGA < 1:1289744/49‑1 CGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACAT > 1:7571928/1‑50 CGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACAT > 1:7714797/1‑50 CGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACAT > 1:1003215/1‑50 GTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATC < 1:5149208/50‑1 GTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATC > 1:3511825/1‑50 TTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCT < 1:5062808/50‑1 TTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCT < 1:3462602/50‑1 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC < 1:6573651/49‑1 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC < 1:155014/49‑1 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC > 1:2922429/1‑49 GTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCA > 1:7267897/1‑50 TCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCAC < 1:5837586/50‑1 CGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:2114809/1‑50 CGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:7906840/1‑50 CGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:1969123/1‑50 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGC < 1:2154870/50‑1 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGC < 1:1957605/50‑1 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:2390009/1‑49 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:2921968/1‑49 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:482116/1‑49 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:1621948/1‑49 TTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCA < 1:4442071/50‑1 TTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCA < 1:944706/50‑1 TTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCA < 1:4787119/50‑1 TTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:7667178/1‑48 TACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAG > 1:5303169/1‑50 ACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGT > 1:7522375/1‑50 CCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTG < 1:6047233/50‑1 CCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTG < 1:6029012/50‑1 CCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGT < 1:3216072/49‑1 CAAACAGCACCGATCATCCGGCGGCGAGCGGCGACATCTCCACGCAGTGC > 1:5785345/1‑50 CAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGC < 1:7163433/50‑1 AAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCG < 1:1097680/50‑1 AAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCG > 1:7281770/1‑50 AAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCG < 1:6680250/50‑1 ACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGC > 1:7018612/1‑49 ACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGC > 1:3144937/1‑49 CAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGA < 1:2860190/50‑1 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC > 1:6931726/1‑50 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC < 1:6423837/50‑1 CACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGC > 1:3114724/1‑50 CACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGC > 1:1370552/1‑50 CACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGC > 1:8125767/1‑50 CACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGAGCGCGACGC < 1:4571575/50‑1 ACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCG < 1:2500222/50‑1 CCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGC < 1:6103678/50‑1 CCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCG > 1:8616090/1‑49 GATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCA > 1:2723522/1‑49 GATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCA > 1:5350060/1‑49 ATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAA < 1:2493162/50‑1 AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846249‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAA > NC_000913/2867269‑2867317 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |