| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,846,301 | Δ20,968 bp | [hycE]–[rpoS] | 21 genes [hycE], hycD, hycC, hycB, hycA, hypA, hypB, hypC, hypD, hypE, fhlA, ygbA, mutS, pphB, ygbI, ygbJ, ygbK, ygbL, ygbM, ygbN, [rpoS] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2846301 | 2867268 | 20968 | 143 [0] | [0] 144 | [hycE]–[rpoS] | [hycE],hycD,hycC,hycB,hycA,hypA,hypB,hypC,hypD,hypE,fhlA,ygbA,mutS,pphB,ygbI,ygbJ,ygbK,ygbL,ygbM,ygbN,[rpoS] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 0 (0.000) | 135 (1.260) | 73/92 | 0.0 | 100% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
Only 100 of 144 total aligned reads displayed.
TTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAA > NC_000913/2867220‑2867318 | cggcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgat < 1:5714213‑M2/1‑1 (MQ=255) ggcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatc < 1:254837‑M2/2‑1 (MQ=255) ggcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatc < 1:2494671‑M2/2‑1 (MQ=255) ggcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgat > 1:5276516‑M2/49‑49 (MQ=255) gcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatca > 1:4930160‑M2/48‑50 (MQ=255) gcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatca < 1:6537998‑M2/3‑1 (MQ=255) cgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcat > 1:2744226‑M2/47‑50 (MQ=255) cgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcat < 1:4160351‑M2/4‑1 (MQ=255) cgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcat > 1:4046619‑M2/47‑50 (MQ=255) cgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcat < 1:3508466‑M2/4‑1 (MQ=255) gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc > 1:7560071‑M2/46‑50 (MQ=255) gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc > 1:8215835‑M2/46‑50 (MQ=255) gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc > 1:2419859‑M2/46‑50 (MQ=255) taatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATcc > 1:3517796‑M2/45‑50 (MQ=255) taatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATcc < 1:6132856‑M2/6‑1 (MQ=255) taatgaccattcagttgcgttcgtcgttaccaaacagcaccgaTCATCcg > 1:6484204‑M2/44‑50 (MQ=255) aatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcg > 1:7021560‑M2/44‑50 (MQ=255) aatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcg > 1:6270087‑M2/44‑50 (MQ=255) aatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcg > 1:1121676‑M2/44‑50 (MQ=255) aatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcg > 1:957166‑M2/44‑50 (MQ=255) aatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcg > 1:7898977‑M2/44‑50 (MQ=255) atgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcgg > 1:6620564‑M2/43‑50 (MQ=255) atgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcgg > 1:2212914‑M2/43‑50 (MQ=255) atgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcgg > 1:1925613‑M2/43‑50 (MQ=255) atgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcg < 1:591815‑M2/7‑1 (MQ=255) tgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcggc > 1:6264733‑M2/42‑50 (MQ=255) accattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcggcgg > 1:3942963‑M2/40‑50 (MQ=255) accactcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcggcg < 1:5763343‑M2/10‑1 (MQ=255) ccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:531028‑M2/39‑50 (MQ=255) ccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc < 1:7708576‑M2/12‑1 (MQ=255) cattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:3167075‑M2/38‑49 (MQ=255) attcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:6915972‑M2/37‑48 (MQ=255) ttcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:8314017‑M2/36‑47 (MQ=255) tcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCga > 1:7531171‑M2/35‑48 (MQ=255) cagtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGagag > 1:637081‑M2/34‑50 (MQ=255) agtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGagag < 1:4033125‑M2/17‑1 (MQ=255) agtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGagag < 1:7349156‑M2/17‑1 (MQ=255) agtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAgg > 1:2612174‑M2/33‑50 (MQ=255) agtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAgg < 1:1799287‑M2/18‑1 (MQ=255) ttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGa > 1:7746986‑M2/30‑50 (MQ=255) tgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGa < 1:1289744‑M2/21‑1 (MQ=255) tgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGa > 1:7677372‑M2/29‑49 (MQ=255) gcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACa > 1:5266245‑M2/28‑50 (MQ=255) cgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAt > 1:7714797‑M2/27‑50 (MQ=255) cgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAt > 1:1003215‑M2/27‑50 (MQ=255) gttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtc < 1:5149208‑M2/25‑1 (MQ=255) ttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtct < 1:5062808‑M2/26‑1 (MQ=255) ttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtct > 1:3606463‑M2/25‑50 (MQ=255) ttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtct < 1:3462602‑M2/26‑1 (MQ=255) tcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtctc > 1:1312228‑M2/24‑50 (MQ=255) cgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtctc < 1:155014‑M2/27‑1 (MQ=255) cgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtctc < 1:5748991‑M2/27‑1 (MQ=255) cgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtctc > 1:2922429‑M2/23‑49 (MQ=255) gtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCa > 1:7267897‑M2/22‑50 (MQ=255) tcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCAc < 1:5837586‑M2/30‑1 (MQ=255) cgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:7906840‑M2/20‑50 (MQ=255) cgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:1969123‑M2/20‑50 (MQ=255) cgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:2114809‑M2/20‑50 (MQ=255) gttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:482116‑M2/19‑49 (MQ=255) gttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:1621948‑M2/19‑49 (MQ=255) gttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:2390009‑M2/19‑49 (MQ=255) gttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:2921968‑M2/19‑49 (MQ=255) gttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGc < 1:1957605‑M2/32‑1 (MQ=255) gttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGc < 1:2154870‑M2/32‑1 (MQ=255) ttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:7667178‑M2/18‑48 (MQ=255) ttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCa < 1:944706‑M2/33‑1 (MQ=255) ttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCa < 1:4787119‑M2/33‑1 (MQ=255) ttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCa < 1:4442071‑M2/33‑1 (MQ=255) accaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAg < 1:1373482‑M2/34‑1 (MQ=255) ccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGt < 1:3216072‑M2/35‑1 (MQ=255) ccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGt < 1:2231553‑M2/35‑1 (MQ=255) ccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTg < 1:6047233‑M2/36‑1 (MQ=255) ccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTg < 1:6029012‑M2/36‑1 (MQ=255) ccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTg < 1:7430452‑M2/36‑1 (MQ=255) caaacagcaccgaTCATCCGGCGGCGAGCGGCGACATCTCCACGCAGTgc > 1:5785345‑M2/14‑50 (MQ=255) aaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcg < 1:1097680‑M2/38‑1 (MQ=255) aaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcg > 1:7281770‑M2/13‑50 (MQ=255) aaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcg < 1:6680250‑M2/38‑1 (MQ=255) aacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcgc < 1:4126941‑M2/39‑1 (MQ=255) acagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcgc > 1:3144937‑M2/11‑49 (MQ=255) acagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcgc > 1:6991982‑M2/11‑49 (MQ=255) acagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGcgcg < 1:5713947‑M2/40‑1 (MQ=255) cagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGa < 1:2860190‑M2/41‑1 (MQ=255) agcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAc > 1:6931726‑M2/9‑50 (MQ=255) caccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgc < 1:6405019‑M2/44‑1 (MQ=255) caccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgc > 1:3114724‑M2/7‑50 (MQ=255) caccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgc > 1:1370552‑M2/7‑50 (MQ=255) caccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgc > 1:8125767‑M2/7‑50 (MQ=255) caccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGAGCGCGAcgc < 1:4571575‑M2/44‑1 (MQ=255) accgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgcg > 1:1562109‑M2/6‑50 (MQ=255) accgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgcg > 1:3224869‑M2/6‑50 (MQ=255) ccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgcg > 1:8616090‑M2/5‑49 (MQ=255) ccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACgcgc < 1:6103678‑M2/46‑1 (MQ=255) gaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCa > 1:2723522‑M2/3‑49 (MQ=255) gaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCa > 1:5350060‑M2/3‑49 (MQ=255) gaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCa > 1:6278277‑M2/3‑49 (MQ=255) gaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCa > 1:7116061‑M2/3‑49 (MQ=255) aTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaaa < 1:2493162‑M2/49‑1 (MQ=255) tcatcCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaaaa < 1:7455568/50‑1 (MQ=255) tcatcCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaaaa < 1:2138440/50‑1 (MQ=255) | TTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAA > NC_000913/2867220‑2867318 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |