| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 49 (0.450) +GA |
36/94 | 0.9 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110631‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC > NC_000913/3136382‑3136430 || CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAG < 1:5039711/50‑1CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAG < 1:2371577/50‑1 GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAA < 1:7123461/50‑1 GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAA > 1:2426914/1‑50 GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAA < 1:4242171/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 1:2022399/50‑1 CTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACG < 1:7359841/50‑1 TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC > 1:7101253/1‑50 TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC > 1:7282794/1‑50 CTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC < 1:8304345/48‑1 CAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATT > 1:1697906/1‑50 GCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT < 1:6492635/50‑1 GCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT < 1:3054664/50‑1 CAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTG < 1:2050623/50‑1 AGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGA < 1:3542044/50‑1 AGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGA < 1:5490072/50‑1 GCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAA < 1:5733946/50‑1 CTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATT > 1:6963717/1‑49 TGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTA > 1:5234788/1‑50 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACG < 1:257434/50‑1 CATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGA < 1:4051527/50‑1 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC < 1:2627537/50‑1 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC < 1:7725607/50‑1 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC < 1:1320749/50‑1 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGG < 1:2074027/50‑1 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGG < 1:597636/50‑1 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG > 1:2090122/1‑49 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG > 1:1275965/1‑49 ATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGA > 1:6652295/1‑50 TTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGAC < 1:1042451/50‑1 TTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGAC > 1:6977032/1‑50 TTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACG > 1:2820864/1‑50 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTA < 1:76370/50‑1 CACCCGCAGCGCATAGAACGTCATTTTGAATTTACGAACGGACGCATTAT > 1:2670641/1‑50 CACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:4473979/1‑50 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT < 1:5213407/49‑1 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:6769902/1‑49 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT < 1:8005410/49‑1 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAG > 1:2895095/1‑50 CGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT > 1:7314335/1‑50 GCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTG < 1:5433848/50‑1 GCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTG < 1:6840972/50‑1 GCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT > 1:7011644/1‑49 GCAGCGCATAGAACGCCATGTTGAATTTACGAACGGACGCATTATCAGTG < 1:3317244/50‑1 CAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGA < 1:8374081/50‑1 GCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACT < 1:7391388/50‑1 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTT < 1:3824924/50‑1 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTT < 1:1149658/50‑1 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 1:57922/1‑49 TAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC < 1:6831809/50‑1 AGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG > 1:5448706/1‑50 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG < 1:6431046/49‑1 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG < 1:4453072/49‑1 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG < 1:1681278/49‑1 AACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC < 1:1872817/50‑1 AACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > 1:3699515/1‑49 || CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110631‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC > NC_000913/3136382‑3136430 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |