| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 49 (0.450) +GA |
36/94 | 0.9 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
CCCTGTGTATATATCAAGGCCAACAAATAAATTTAGCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC > NC_000913/3136333‑3136430 | ggcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaa < 1:7123461‑M2/1‑1 (MQ=255)ggcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaa < 1:4242171‑M2/1‑1 (MQ=255)ggcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaa > 1:2426914‑M2/50‑50 (MQ=255) gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 1:2022399‑M2/2‑1 (MQ=255) cttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACg < 1:7359841‑M2/3‑1 (MQ=255) ttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:7101253‑M2/47‑50 (MQ=255) ttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:7282794‑M2/47‑50 (MQ=255) ctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc < 1:8304345‑M2/4‑1 (MQ=255) cagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtt > 1:1697906‑M2/43‑50 (MQ=255) gcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtttt < 1:6492635‑M2/10‑1 (MQ=255) gcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtttt < 1:3054664‑M2/10‑1 (MQ=255) cagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTg < 1:2050623‑M2/11‑1 (MQ=255) agcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGa < 1:5490072‑M2/12‑1 (MQ=255) agcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGa < 1:3542044‑M2/12‑1 (MQ=255) gcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGaa < 1:5733946‑M2/13‑1 (MQ=255) ctgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAtt > 1:6963717‑M2/35‑49 (MQ=255) tgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTa > 1:5234788‑M2/34‑50 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACg < 1:257434‑M2/19‑1 (MQ=255) catcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGa < 1:4051527‑M2/20‑1 (MQ=255) tcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAAc < 1:2627537‑M2/22‑1 (MQ=255) tcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAAc < 1:7725607‑M2/22‑1 (MQ=255) tcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAAc < 1:1320749‑M2/22‑1 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACgg < 1:2074027‑M2/24‑1 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACgg < 1:597636‑M2/24‑1 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACg > 1:2090122‑M2/27‑49 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACg > 1:1275965‑M2/27‑49 (MQ=255) atttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGa > 1:6652295‑M2/26‑50 (MQ=255) tttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGAc < 1:1042451‑M2/26‑1 (MQ=255) tttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGAc > 1:6977032‑M2/25‑50 (MQ=255) ttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACg > 1:2820864‑M2/24‑50 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTa < 1:76370‑M2/32‑1 (MQ=255) cacccgcagcgcatagaACGTCATTTTGAATTTACGAACGGACGCATTAt > 1:2670641‑M2/18‑50 (MQ=255) cacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:4473979‑M2/18‑50 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt < 1:5213407‑M2/33‑1 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:6769902‑M2/17‑49 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt < 1:8005410‑M2/33‑1 (MQ=255) ccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAg > 1:2895095‑M2/15‑50 (MQ=255) cgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGt > 1:7314335‑M2/14‑50 (MQ=255) gcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGt > 1:7011644‑M2/13‑49 (MQ=255) gcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTg < 1:5433848‑M2/38‑1 (MQ=255) gcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTg < 1:6840972‑M2/38‑1 (MQ=255) gcagcgcatagaACGCCATGTTGAATTTACGAACGGACGCATTATCAGTg < 1:3317244‑M2/38‑1 (MQ=255) cagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGa < 1:8374081‑M2/39‑1 (MQ=255) gcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACt < 1:7391388‑M2/41‑1 (MQ=255) gcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACttt < 1:3824924‑M2/43‑1 (MQ=255) gcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACttt < 1:1149658‑M2/43‑1 (MQ=255) gcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt > 1:57922‑M2/8‑49 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAc < 1:6831809‑M2/46‑1 (MQ=255) agaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg > 1:5448706‑M2/4‑50 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg < 1:6431046‑M2/47‑1 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg < 1:4453072‑M2/47‑1 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg < 1:1681278‑M2/47‑1 (MQ=255) aACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACgg > 1:3699515‑M2/2‑49 (MQ=255) aACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGc < 1:1872817‑M2/49‑1 (MQ=255) | CCCTGTGTATATATCAAGGCCAACAAATAAATTTAGCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC > NC_000913/3136333‑3136430 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |