| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3875268 | 154 (1.350) | 120 (1.440) +CGCGCAGGAAACA |
5/72 | 8.3 | 56.9% | intergenic (‑108/‑170) | dgoR/yidX | putative DNA‑binding transcriptional regulator DgoR/putative lipoprotein YidX |
| ? | NC_000913 | 4641321 = | 95 (0.830) | coding (380/687 nt) | yjtD | putative rRNA methyltransferase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 120 total aligned reads displayed.
ACGTTCGCGTTTGCCGTGCGTGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3875245‑3875268‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGACGTTCTTACTGGTG > NC_000913/4641321‑4641338 ||||||||||||| ttGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTAC < 1:2615911/48‑1ttGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTAC > 1:5772985/3‑50ttGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTAC < 1:329930/48‑1ttGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTAC < 1:6020137/48‑1ttGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTAC < 1:5028524/48‑1ttGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTAC < 1:6634538/48‑1ttGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTAC < 1:1878510/48‑1ttGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTAC > 1:4577532/3‑50ttGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTAC < 1:7655631/48‑1ttGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTAC < 1:7907230/48‑1ttGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTAC > 1:8214328/3‑50 tGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACT > 1:1722871/2‑50 tGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACT > 1:6949389/2‑50 tGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACT > 1:6417397/2‑50 tGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACT > 1:6026664/2‑50 tGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACT > 1:5983111/2‑50 GTTCGCGTTTACCTTGTGTGTACGCGCAGGAAACACTGACGTTCTTACT < 1:3722408/49‑1 GTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTGCT < 1:451959/49‑1 GTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACT > 1:4987498/1‑49 GTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACT < 1:4311383/49‑1 GTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACT < 1:6343851/49‑1 GTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACT < 1:5183130/49‑1 GTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACT > 1:5406737/1‑49 GTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACT < 1:5547252/49‑1 GTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACT < 1:3368229/49‑1 GTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACT > 1:3348331/1‑49 GTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACT < 1:2920895/49‑1 GTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACT > 1:2705172/1‑49 GTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACT < 1:2682958/49‑1 GTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACT > 1:6419691/1‑49 GTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACT > 1:6726200/1‑49 GTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACT < 1:683947/49‑1 GTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACT > 1:7500172/1‑49 GTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACT < 1:1038576/49‑1 GTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGGTCTTACT > 1:8587902/1‑49 TTCGCGTTTGCCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGa < 1:750102/50‑2 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGa > 1:4400530/1‑49 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGa > 1:7201502/1‑49 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGa < 1:7188116/50‑2 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGa < 1:6808250/50‑2 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGa > 1:6706736/1‑49 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGa > 1:2667653/1‑49 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGa < 1:2790181/50‑2 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGa > 1:7632106/1‑49 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGa > 1:2860409/1‑49 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGa < 1:7828948/50‑2 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGa < 1:8302264/50‑2 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGa < 1:8412514/50‑2 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGa < 1:5483646/50‑2 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGa > 1:5442391/1‑49 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGa < 1:5294573/50‑2 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGa < 1:5250569/50‑2 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGa < 1:5189831/50‑2 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGa < 1:4581793/50‑2 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTG < 1:858001/49‑1 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTG < 1:3684757/49‑1 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTG < 1:7627327/49‑1 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTG < 1:4842915/49‑1 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTG < 1:1963447/49‑1 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTG < 1:406056/49‑1 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTG < 1:3875751/49‑1 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTG < 1:1678032/49‑1 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTG < 1:5894279/49‑1 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTG > 1:7270560/1‑49 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTG < 1:4574311/49‑1 TTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTG < 1:5262495/49‑1 TTCGCGTTTACCCTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGa > 1:7436718/1‑49 TTCGCGTGTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGa < 1:8501212/50‑2 TTCGCGGTTACCTTGCGGGTACGCGCAGGAAACACTGACGTTCTTACTGa < 1:6093751/50‑2 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac > 1:6297820/1‑48 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac > 1:4166585/1‑48 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac > 1:1336642/1‑48 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac > 1:7014040/1‑48 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac > 1:356478/1‑48 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac > 1:722762/1‑48 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac > 1:3603682/1‑48 CGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac < 1:8586796/49‑3 CGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac < 1:1355923/49‑3 CGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac < 1:7813956/49‑3 CGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac < 1:1497840/49‑3 CGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac < 1:1255311/49‑3 CGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac < 1:1131028/49‑3 CGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac < 1:7048197/49‑3 CGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac < 1:4563638/49‑3 CGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac < 1:4135152/49‑3 CGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac < 1:5004659/49‑3 CGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac < 1:5007665/49‑3 CGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac < 1:5777368/49‑3 CGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac < 1:5821929/49‑3 CGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac < 1:2927666/49‑3 CGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac < 1:2843554/49‑3 CGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac < 1:6049737/49‑3 CGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac < 1:2815881/49‑3 CGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac < 1:6417718/49‑3 CGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac < 1:1991953/49‑3 CGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac < 1:1839516/49‑3 CGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac < 1:7017075/49‑3 CGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGac < 1:7054738/49‑3 CGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGGc < 1:5619699/49‑2 CGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGATG > 1:6007742/1‑50 ||||||||||||| ACGTTCGCGTTTGCCGTGCGTGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3875245‑3875268‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGACGTTCTTACTGGTG > NC_000913/4641321‑4641338 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |