| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,888,432 | Δ18,167 bp | tnaC–bglG | 17 genes tnaC, tnaA, tnaB, mdtL, yidZ, yieE, yieF, adeP, yieH, cbrB, cbrC, yieK, yieL, bglH, bglB, bglF, bglG |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3888432 | 3906598 | 18167 | 60 [0] | [0] 61 | tnaC–bglG | tnaC,tnaA,tnaB,mdtL,yidZ,yieE,yieF,adeP,yieH,cbrB,cbrC,yieK,yieL,bglH,bglB,bglF,bglG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 0 (0.000) | 58 (0.520) | 43/96 | 0.4 | 100% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
AAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3888383‑3888431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGC > NC_000913/3906599‑3906646 AAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC < 1:6256677/50‑1AAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC > 1:5138344/1‑50AAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC > 1:8551244/1‑50 AAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC > 1:6970839/1‑49 ACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGAC > 1:856758/1‑50 ACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGAC > 1:6435857/1‑50 ACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGAC > 1:7344819/1‑50 CTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACT > 1:76207/1‑50 CTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACT > 1:4094551/1‑50 TCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTT > 1:3204749/1‑50 TCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTT > 1:7771958/1‑50 CTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTT > 1:5236312/1‑49 TGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCA > 1:5277939/1‑50 TGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCA > 1:3144656/1‑50 TGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCA > 1:1502384/1‑50 TGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTT < 1:3401105/48‑1 TGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTT < 1:1254188/48‑1 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACC < 1:1442390/50‑1 TGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAG < 1:7314029/50‑1 TAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTA < 1:6375293/50‑1 TAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTA > 1:6510435/1‑50 TAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGT < 1:5709071/49‑1 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTAT < 1:7714360/49‑1 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTAT < 1:4403152/49‑1 TAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTC > 1:4774420/1‑50 AATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCT > 1:1662140/1‑50 ATGTAGCCTCGTGTCTTGCGAGGATAAGTGTCGACTTCACCAGTATTCT < 1:4705301/49‑1 ATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTC < 1:4600253/50‑1 TGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCT > 1:7159656/1‑50 GTAGCCTCGCGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTG > 1:580571/1‑50 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGG > 1:7497954/1‑50 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGG > 1:5636102/1‑50 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTG < 1:7224346/49‑1 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTG < 1:190623/49‑1 GCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTT < 1:117018/50‑1 GCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTT < 1:4036445/50‑1 CCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTA < 1:6377873/50‑1 CGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT > 1:2343251/1‑50 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTC < 1:3777977/50‑1 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT > 1:7285122/1‑49 TCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAG < 1:1267843/49‑1 TCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAG < 1:8513346/49‑1 CTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGT > 1:3332875/1‑50 GCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTT > 1:1038136/1‑50 GCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTT < 1:872024/49‑1 CGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTG > 1:3744566/1‑50 CGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTG > 1:4171813/1‑50 CGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTT < 1:6534856/49‑1 GAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGC > 1:4697949/1‑50 AGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCC < 1:2882408/50‑1 AGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCC < 1:1826150/50‑1 AGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCC > 1:7927068/1‑50 GGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCT > 1:8055778/1‑50 GATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTG < 1:6255043/50‑1 AAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCG > 1:1490222/1‑49 AGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAA < 1:3397577/50‑1 AGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGA < 1:6600230/49‑1 TGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATG > 1:7802214/1‑50 CCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGC < 1:8251164/49‑1 CCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATG > 1:359947/1‑48 AAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3888383‑3888431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGC > NC_000913/3906599‑3906646 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |