| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 84 [0] | [0] 83 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 81 (0.710) | 54/98 | 0.1 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
ATGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGATGAAAAAAAGTGTATTGACGGCGTTTATAACTGTGGTATGTGCAACGT > NC_000913/997818‑997916 | aTGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACg > 1:8230813/1‑50 (MQ=255)aTGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACg > 1:3873799/1‑50 (MQ=255)aTGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACg > 1:569113/1‑50 (MQ=255) gTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtt > 1:3671968‑M1/1‑48 (MQ=255) gTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtt > 1:4636763‑M1/1‑48 (MQ=255) gTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtt > 1:4543635‑M1/1‑48 (MQ=255) tCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGttt < 1:6761285‑M1/50‑4 (MQ=255) tCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGttt > 1:2302472‑M1/1‑47 (MQ=255) cATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttg > 1:3539857‑M1/1‑46 (MQ=255) cATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttg > 1:4469945‑M1/1‑46 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgc > 1:160842‑M1/1‑45 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgc > 1:427166‑M1/1‑45 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgc > 1:4140719‑M1/1‑45 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgc > 1:6383585‑M1/1‑45 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttg < 1:1768259‑M1/49‑5 (MQ=255) tttAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgcc > 1:619815‑M1/1‑44 (MQ=255) ttAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg > 1:915144‑M1/1‑43 (MQ=255) tAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg > 1:1671411‑M1/1‑42 (MQ=255) tAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg < 1:2542790‑M1/49‑8 (MQ=255) aaaGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgc < 1:4655177‑M1/49‑9 (MQ=255) aaaGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg > 1:6420293‑M1/1‑41 (MQ=255) aaGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcag > 1:1341582‑M1/1‑40 (MQ=255) aGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcagg > 1:3688027‑M1/1‑39 (MQ=255) aGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcagg > 1:6456837‑M1/1‑39 (MQ=255) gCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtc < 1:7668340‑M1/50‑14 (MQ=255) cATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtca < 1:3989731‑M1/50‑15 (MQ=255) aTTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaa < 1:5480219‑M1/50‑16 (MQ=255) aTTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaa > 1:2522470‑M1/1‑35 (MQ=255) ttATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaat > 1:6245563‑M1/1‑34 (MQ=255) ttATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaat > 1:3459030‑M1/1‑34 (MQ=255) ttATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaat > 1:4605507‑M1/1‑34 (MQ=255) tATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaatt > 1:7758998‑M1/1‑33 (MQ=255) tATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaatt > 1:2233302‑M1/1‑33 (MQ=255) aTCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattc > 1:8535575‑M1/1‑32 (MQ=255) aTCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaatt < 1:4944722‑M1/49‑18 (MQ=255) tCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcc < 1:1155255‑M1/50‑20 (MQ=255) tCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattc < 1:4393274‑M1/49‑19 (MQ=255) cATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccc > 1:4858460‑M1/1‑30 (MQ=255) atatTTACGAAGCGATCAGGATGATAACGtttgccgcaggtcaattc < 1:4744321‑M1/47‑19 (MQ=255) tatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctt > 1:6570113‑M1/1‑28 (MQ=255) tatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctt > 1:455752‑M1/1‑28 (MQ=255) tatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctt > 1:6155582‑M1/1‑28 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctttt < 1:8359546‑M1/50‑25 (MQ=255) ttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttg > 1:4267292‑M1/1‑25 (MQ=255) ttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttg > 1:1168716‑M1/1‑25 (MQ=255) tACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttgg > 1:5215482‑M1/1‑24 (MQ=255) aCGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggt > 1:6372574‑M1/1‑23 (MQ=255) aCGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggt > 1:6469939‑M1/1‑23 (MQ=255) cGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtc > 1:5600189‑M1/1‑22 (MQ=255) cGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggt < 1:7905221‑M1/49‑28 (MQ=255) cGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggt < 1:3723830‑M1/49‑28 (MQ=255) cGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggac > 1:6549503‑M1/1‑22 (MQ=255) aaGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtccg < 1:5474526‑M1/50‑31 (MQ=255) aaGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtcc > 1:280962‑M1/1‑20 (MQ=255) agagATCAGGATGATAACGtttgccgcaggtcaattcccttttggtccg > 1:7295305‑M1/1‑19 (MQ=255) gagaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaa > 1:3413992‑M1/1‑18 (MQ=255) agaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaac > 1:4545766‑M1/1‑17 (MQ=255) agaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaac < 1:1038654‑M1/50‑34 (MQ=255) agaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaac > 1:8015196‑M1/1‑17 (MQ=255) agaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaac > 1:424374‑M1/1‑17 (MQ=255) agaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaac < 1:7724931‑M1/50‑34 (MQ=255) agaTCAGGATGATAACGtttgccgcaggacaattcccttttggtccgaac > 1:400708‑M1/1‑17 (MQ=255) aTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactc < 1:5330506‑M1/50‑36 (MQ=255) aTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactc < 1:2947551‑M1/50‑36 (MQ=255) tCAGGATGATAACGtttgccgcaggccaattcccttttggtccgaactcg > 1:1759828‑M1/1‑14 (MQ=255) cAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcg > 1:3180379‑M1/1‑13 (MQ=255) cAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcg > 1:3247346‑M1/1‑13 (MQ=255) aGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcgca > 1:2502310‑M1/1‑12 (MQ=255) aGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcgc < 1:6845543‑M1/49‑38 (MQ=255) ggATGATAACGtttgccgcaggtcaattcccttttggtccgaactcgca > 1:3969315‑M1/1‑11 (MQ=255) atgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcacat < 1:8242052‑M1/50‑42 (MQ=255) atgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcaca > 1:7894918‑M1/1‑9 (MQ=255) tgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcacat > 1:5780222‑M1/1‑8 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataa < 1:1914800‑M1/49‑44 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataa < 1:6995133‑M1/49‑44 (MQ=255) tAACGtttgccgcaggtcaattcccttttggtccgatctcgcacataata > 1:2863630‑M1/1‑5 (MQ=255) tAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataata > 1:6091357‑M1/1‑5 (MQ=255) aaCGtttgccgcaggtcaattcccttttggtccgaactcgcacataatac > 1:1569570‑M1/1‑4 (MQ=255) aCGtttgccgcaggtcaattcccttttggtccgaactcgcacataatac < 1:3684269‑M1/49‑47 (MQ=255) aCGtttgccgcagggcaattcccttttggtccgaactcgcacataatacg < 1:5147778‑M1/50‑48 (MQ=255) cGtttgccgcaggtcaattcccttttggtccgaactcgcacataatacgc < 1:5069981‑M1/50‑49 (MQ=255) gtttgccgcaggtcaattcccttttggtccgaactcgcacataatacgcc > 1:5795482‑M1/1‑1 (MQ=255) gtttgccgcaggtcaattcccttttggtccgaactcgcacataatacgcc > 1:2412975‑M1/1‑1 (MQ=255) gtttgccgcaggtcaattcccttttggtccgaactcgcacataatacgcc > 1:6943775‑M1/1‑1 (MQ=255) | ATGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGATGAAAAAAAGTGTATTGACGGCGTTTATAACTGTGGTATGTGCAACGT > NC_000913/997818‑997916 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |