| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 84 [0] | [0] 83 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 81 (0.710) | 54/98 | 0.1 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
AGGAGCAAAATCTGCCCTGAAACAGGTTCGGAAAACGTTTGCGTTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCC > NC_000913/1004638‑1004735 | gtcatttaaaggcattatcatatttacgaagagatcaggatgataacgtt > 1:4636763‑M2/49‑50 (MQ=255)gtcatttaaaggcattatcatatttacgaagagatcaggatgataacgtt > 1:4543635‑M2/49‑50 (MQ=255)gtcatttaaaggcattatcatatttacgaagagatcaggatgataacgtt > 1:3671968‑M2/49‑50 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgttt < 1:6761285‑M2/3‑1 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgttt > 1:2302472‑M2/48‑50 (MQ=255) catttaaaggcattatcatatttacgaagagatcaggatgataacgTTTg > 1:4469945‑M2/47‑50 (MQ=255) catttaaaggcattatcatatttacgaagagatcaggatgataacgTTTg > 1:3539857‑M2/47‑50 (MQ=255) atttaaaggcattatcatatttacgaagagatcaggatgataacgTTTg < 1:1768259‑M2/4‑1 (MQ=255) atttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGc > 1:6383585‑M2/46‑50 (MQ=255) atttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGc > 1:160842‑M2/46‑50 (MQ=255) atttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGc > 1:427166‑M2/46‑50 (MQ=255) atttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGc > 1:4140719‑M2/46‑50 (MQ=255) tttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGcc > 1:619815‑M2/45‑50 (MQ=255) ttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 1:915144‑M2/44‑50 (MQ=255) taaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg < 1:2542790‑M2/7‑1 (MQ=255) taaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 1:1671411‑M2/43‑49 (MQ=255) aaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 1:6420293‑M2/42‑48 (MQ=255) aaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCGc < 1:4655177‑M2/8‑1 (MQ=255) aaggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAg > 1:1341582‑M2/41‑50 (MQ=255) aggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAgg > 1:6456837‑M2/40‑50 (MQ=255) aggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAgg > 1:3688027‑M2/40‑50 (MQ=255) gcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTc < 1:7668340‑M2/13‑1 (MQ=255) cattatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCa < 1:3989731‑M2/14‑1 (MQ=255) attatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCaa > 1:2522470‑M2/36‑50 (MQ=255) attatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCaa < 1:5480219‑M2/15‑1 (MQ=255) ttatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAt > 1:3459030‑M2/35‑50 (MQ=255) ttatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAt > 1:6245563‑M2/35‑50 (MQ=255) ttatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAt > 1:4605507‑M2/35‑50 (MQ=255) tatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAtt > 1:7758998‑M2/34‑50 (MQ=255) tatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAtt > 1:2233302‑M2/34‑50 (MQ=255) atcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAtt < 1:4944722‑M2/17‑1 (MQ=255) atcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTc > 1:8535575‑M2/33‑50 (MQ=255) tcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTcc < 1:1155255‑M2/19‑1 (MQ=255) tcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTc < 1:4393274‑M2/18‑1 (MQ=255) catatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTccc > 1:4858460‑M2/31‑50 (MQ=255) atatttacgaagcgatcaggatgataacgTTTGCCGCAGGTCAATTc < 1:4744321‑M2/18‑1 (MQ=255) tatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtt > 1:6155582‑M2/29‑50 (MQ=255) tatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtt > 1:6570113‑M2/29‑50 (MQ=255) tatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtt > 1:455752‑M2/29‑50 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtttt < 1:8359546‑M2/24‑1 (MQ=255) ttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTg > 1:4267292‑M2/26‑50 (MQ=255) ttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTg > 1:1168716‑M2/26‑50 (MQ=255) tacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTgg > 1:5215482‑M2/25‑50 (MQ=255) acgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGt > 1:6469939‑M2/24‑50 (MQ=255) acgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGt > 1:6372574‑M2/24‑50 (MQ=255) cgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTttggac > 1:6549503‑M2/23‑48 (MQ=255) cgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGt < 1:3723830‑M2/27‑1 (MQ=255) cgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGt < 1:7905221‑M2/27‑1 (MQ=255) cgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTc > 1:5600189‑M2/23‑50 (MQ=255) aagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 1:280962‑M2/21‑49 (MQ=255) aagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCg < 1:5474526‑M2/30‑1 (MQ=255) agagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCg > 1:7295305‑M2/20‑49 (MQ=255) gagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGaa > 1:3413992‑M2/19‑50 (MQ=255) agatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAc > 1:8015196‑M2/18‑50 (MQ=255) agatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAc < 1:7724931‑M2/33‑1 (MQ=255) agatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAc < 1:1038654‑M2/33‑1 (MQ=255) agatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAc > 1:424374‑M2/18‑50 (MQ=255) agatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAc > 1:4545766‑M2/18‑50 (MQ=255) agatcaggatgataacgTTTGCCGCAGGACAATTCCCTTTTGGTCCGAAc > 1:400708‑M2/18‑50 (MQ=255) atcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTc < 1:2947551‑M2/35‑1 (MQ=255) atcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTc < 1:5330506‑M2/35‑1 (MQ=255) tcaggatgataacgTTTGCCGCAGGCCAATTCCCTTTTGGTCCGAACTCg > 1:1759828‑M2/15‑50 (MQ=255) caggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCg > 1:3247346‑M2/14‑49 (MQ=255) caggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCg > 1:3180379‑M2/14‑49 (MQ=255) aggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGca > 1:2502310‑M2/13‑50 (MQ=255) aggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGc < 1:6845543‑M2/37‑1 (MQ=255) ggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGca > 1:3969315‑M2/12‑49 (MQ=255) atgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGcaca > 1:7894918‑M2/10‑49 (MQ=255) atgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACat < 1:8242052‑M2/41‑1 (MQ=255) tgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACat > 1:5780222‑M2/9‑49 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataa < 1:1914800‑M2/43‑1 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataa < 1:6995133‑M2/43‑1 (MQ=255) taacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGATCTCGCACataata > 1:2863630‑M2/6‑50 (MQ=255) taacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataata > 1:6091357‑M2/6‑50 (MQ=255) aacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAc > 1:1569570‑M2/5‑50 (MQ=255) acgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAc < 1:3684269‑M2/46‑1 (MQ=255) acgTTTGCCGCAGGGCAATTCCCTTTTGGTCCGAACTCGCACATAATACg < 1:5147778‑M2/47‑1 (MQ=255) cgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGc < 1:5069981‑M2/48‑1 (MQ=255) gTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGcc > 1:6943775‑M2/2‑50 (MQ=255) gTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGcc > 1:2412975‑M2/2‑50 (MQ=255) gTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGcc > 1:5795482‑M2/2‑50 (MQ=255) tttGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGccc > 1:4704994/1‑50 (MQ=255) tttGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGccc > 1:6056395/1‑50 (MQ=255) | AGGAGCAAAATCTGCCCTGAAACAGGTTCGGAAAACGTTTGCGTTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCC > NC_000913/1004638‑1004735 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |