| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 107 [0] | [0] 107 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 105 (0.940) | 59/96 | 0.0 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
Only 100 of 107 total aligned reads displayed.
AGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTAATTTTTTTGTCCTTCAGCGATAATTCACAATCACTTCATTACGTTGTA > NC_000913/1962517‑1962614 | aGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTc < 1:486818‑M1/50‑2 (MQ=255) gACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcg > 1:442850‑M1/1‑48 (MQ=255) gACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcg > 1:4611927‑M1/1‑48 (MQ=255) cATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgc > 1:619802‑M1/1‑46 (MQ=255) aTCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgcta > 1:3371420‑M1/1‑45 (MQ=255) aTCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgcta > 1:4684186‑M1/1‑45 (MQ=255) aTCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgcta > 1:2496971‑M1/1‑45 (MQ=255) tCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctac > 1:4290944‑M1/1‑44 (MQ=255) tCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctac < 1:4504060‑M1/50‑7 (MQ=255) tCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctac < 1:456543‑M1/50‑7 (MQ=255) cGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacg > 1:1532197‑M1/1‑43 (MQ=255) gAGCCTTTTTCTCTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgc > 1:6932911‑M1/1‑42 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgc > 1:5162332‑M1/1‑42 (MQ=255) aGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgc > 1:3386374‑M1/1‑41 (MQ=255) gCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgcta < 1:2452517‑M1/50‑11 (MQ=255) gCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgcta < 1:4794793‑M1/50‑11 (MQ=255) gCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgcta < 1:7897977‑M1/50‑11 (MQ=255) ccTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctag < 1:1528660‑M1/50‑12 (MQ=255) ccTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctag < 1:6628341‑M1/50‑12 (MQ=255) cTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagc < 1:2793851‑M1/50‑13 (MQ=255) cTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagc < 1:2825455‑M1/50‑13 (MQ=255) cTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctag > 1:6517205‑M1/1‑38 (MQ=255) cTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctag > 1:4512251‑M1/1‑38 (MQ=255) tttttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagc > 1:3628109‑M1/1‑37 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaag > 1:4054301‑M1/1‑35 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaag > 1:8558200‑M1/1‑35 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaag > 1:7996879‑M1/1‑35 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagca < 1:3978758‑M1/48‑14 (MQ=255) ttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaag < 1:7538366‑M1/49‑16 (MQ=255) tCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagc > 1:4040980‑M1/1‑33 (MQ=255) tCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagc < 1:8121106‑M1/49‑17 (MQ=255) tCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagc > 1:6704081‑M1/1‑33 (MQ=255) tCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaaga < 1:2674432‑M1/49‑17 (MQ=255) cACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagca < 1:696035‑M1/49‑18 (MQ=255) cACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagca < 1:4232038‑M1/49‑18 (MQ=255) aCTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaa < 1:3993607‑M1/49‑19 (MQ=255) cTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaa < 1:5667460‑M1/50‑21 (MQ=255) cTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaa < 1:5631567‑M1/50‑21 (MQ=255) cTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaa < 1:4154761‑M1/50‑21 (MQ=255) cTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaa < 1:3841228‑M1/50‑21 (MQ=255) cTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaa > 1:8401814‑M1/1‑30 (MQ=255) tGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaa > 1:3605713‑M1/1‑29 (MQ=255) gAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat > 1:126821‑M1/1‑28 (MQ=255) gAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat > 1:6136724‑M1/1‑28 (MQ=255) gTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatg > 1:3501904‑M1/1‑26 (MQ=255) ttattaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaa < 1:8235528‑M1/50‑26 (MQ=255) ttattaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaa < 1:1715050‑M1/50‑26 (MQ=255) attaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa > 1:4737648‑M1/1‑23 (MQ=255) attaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa > 1:1652885‑M1/1‑23 (MQ=255) ttaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaac < 1:7564654‑M1/49‑28 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacag < 1:1058190‑M1/49‑30 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacag < 1:4953275‑M1/49‑30 (MQ=255) aaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacagg < 1:2158378‑M1/49‑31 (MQ=255) aaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacagg < 1:6670173‑M1/49‑31 (MQ=255) aCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaa < 1:6660535‑M1/50‑33 (MQ=255) aCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaa < 1:1749628‑M1/50‑33 (MQ=255) aCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaa > 1:7015534‑M1/1‑18 (MQ=255) aCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaataaaacaggaa < 1:6704995‑M1/50‑33 (MQ=255) cATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaat < 1:5001615‑M1/50‑34 (MQ=255) cATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaat < 1:5779888‑M1/50‑34 (MQ=255) cATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaat < 1:8505907‑M1/50‑34 (MQ=255) aTACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaata < 1:3826883‑M1/50‑35 (MQ=255) aTACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaat > 1:7582996‑M1/1‑16 (MQ=255) aTACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaat > 1:8227442‑M1/1‑16 (MQ=255) aTACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaat > 1:7884641‑M1/1‑16 (MQ=255) tACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataa < 1:8310133‑M1/50‑36 (MQ=255) tACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataa > 1:3082518‑M1/1‑15 (MQ=255) tACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataa < 1:3145629‑M1/50‑36 (MQ=255) tACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataa < 1:4244657‑M1/50‑36 (MQ=255) aCTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataat > 1:4831501‑M1/1‑14 (MQ=255) cTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatc < 1:6069341‑M1/50‑38 (MQ=255) cTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataat < 1:5935094‑M1/49‑37 (MQ=255) tCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatc > 1:8330278‑M1/1‑12 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcg < 1:4128878‑M1/48‑39 (MQ=255) cgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa > 1:1157857‑M1/1‑9 (MQ=255) cgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa < 1:3521715‑M1/50‑42 (MQ=255) cgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa > 1:4027740‑M1/1‑9 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat > 1:7783511‑M1/1‑8 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat > 1:1234780‑M1/1‑8 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat > 1:2760625‑M1/1‑8 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat < 1:4563528‑M1/50‑43 (MQ=255) aGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg > 1:6239502‑M1/1‑7 (MQ=255) aGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg > 1:6235893‑M1/1‑7 (MQ=255) aGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg < 1:8334034‑M1/50‑44 (MQ=255) aGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg > 1:6456302‑M1/1‑7 (MQ=255) aGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg > 1:5675967‑M1/1‑7 (MQ=255) gcgcGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg < 1:5082027‑M1/50‑45 (MQ=255) gcgcGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg < 1:683904‑M1/50‑45 (MQ=255) gcgcGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg < 1:5244835‑M1/50‑45 (MQ=255) cgcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggg < 1:2658239‑M1/50‑46 (MQ=255) gcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga < 1:3370102‑M1/50‑47 (MQ=255) gcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga > 1:7413445‑M1/1‑4 (MQ=255) cgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat < 1:576318‑M1/50‑48 (MQ=255) cgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat > 1:8356586‑M1/1‑3 (MQ=255) cgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat > 1:1674267‑M1/1‑3 (MQ=255) cgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat < 1:4816409‑M1/50‑48 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg < 1:5521887‑M1/50‑49 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg > 1:5167119‑M1/1‑2 (MQ=255) tcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgt < 1:2776928‑M1/50‑50 (MQ=255) tcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgt < 1:8359193‑M1/50‑50 (MQ=255) | AGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTAATTTTTTTGTCCTTCAGCGATAATTCACAATCACTTCATTACGTTGTA > NC_000913/1962517‑1962614 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |