| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 107 [0] | [0] 107 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 105 (0.940) | 59/96 | 0.0 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
Only 100 of 107 total aligned reads displayed.
TAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT > NC_000913/1979281‑1979378 | agacatcgagcctttttcactgagttattaaacatactcgcgagcgcgtc < 1:486818‑M2/1‑1 (MQ=255) gacatcgagcctttttcactgagttattaaacatactcgcgagcgcgtcg > 1:442850‑M2/49‑50 (MQ=255) gacatcgagcctttttcactgagttattaaacatactcgcgagcgcgtcg > 1:4611927‑M2/49‑50 (MQ=255) catcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgc > 1:619802‑M2/47‑49 (MQ=255) atcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgcta > 1:3371420‑M2/46‑50 (MQ=255) atcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgcta > 1:4684186‑M2/46‑50 (MQ=255) atcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgcta > 1:2496971‑M2/46‑50 (MQ=255) tcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac > 1:4290944‑M2/45‑50 (MQ=255) tcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac < 1:4504060‑M2/6‑1 (MQ=255) tcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac < 1:456543‑M2/6‑1 (MQ=255) cgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacg > 1:1532197‑M2/44‑50 (MQ=255) gagcctttttctctgagttattaaacatactcgcgagcgcgtcgctacgc > 1:6932911‑M2/43‑50 (MQ=255) gagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgc > 1:5162332‑M2/43‑50 (MQ=255) agcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgc > 1:3386374‑M2/42‑49 (MQ=255) gcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgcta < 1:2452517‑M2/10‑1 (MQ=255) gcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgcta < 1:4794793‑M2/10‑1 (MQ=255) gcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgcta < 1:7897977‑M2/10‑1 (MQ=255) cctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTag < 1:1528660‑M2/11‑1 (MQ=255) cctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTag < 1:6628341‑M2/11‑1 (MQ=255) ctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagc < 1:2793851‑M2/12‑1 (MQ=255) ctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagc < 1:2825455‑M2/12‑1 (MQ=255) ctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTag > 1:6517205‑M2/39‑49 (MQ=255) ctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTag > 1:4512251‑M2/39‑49 (MQ=255) tttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagc > 1:3628109‑M2/38‑49 (MQ=255) tttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaag > 1:4054301‑M2/36‑50 (MQ=255) tttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaag > 1:8558200‑M2/36‑50 (MQ=255) tttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaag > 1:7996879‑M2/36‑50 (MQ=255) tttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagca < 1:3978758‑M2/13‑1 (MQ=255) ttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaag < 1:7538366‑M2/15‑1 (MQ=255) tcactgagttattaaacatactcgcgagcgcgtCGCTACGCtagcaaga < 1:2674432‑M2/16‑2 (MQ=255) tcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagc > 1:4040980‑M2/34‑49 (MQ=255) tcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagc < 1:8121106‑M2/16‑1 (MQ=255) tcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagc > 1:6704081‑M2/34‑49 (MQ=255) cactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagca < 1:696035‑M2/17‑1 (MQ=255) cactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagca < 1:4232038‑M2/17‑1 (MQ=255) actgagttattaaacatactcgcgagcgcgtCGCTACGCTAgcaagcaa < 1:3993607‑M2/18‑1 (MQ=255) ctgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaa < 1:5667460‑M2/20‑1 (MQ=255) ctgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaa < 1:5631567‑M2/20‑1 (MQ=255) ctgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaa < 1:4154761‑M2/20‑1 (MQ=255) ctgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaa < 1:3841228‑M2/20‑1 (MQ=255) ctgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaa > 1:8401814‑M2/31‑49 (MQ=255) tgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaaa > 1:3605713‑M2/30‑50 (MQ=255) gagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt > 1:126821‑M2/29‑50 (MQ=255) gagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt > 1:6136724‑M2/29‑50 (MQ=255) gttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATg > 1:3501904‑M2/27‑49 (MQ=255) ttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaa < 1:8235528‑M2/25‑1 (MQ=255) ttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaa < 1:1715050‑M2/25‑1 (MQ=255) attaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaaa > 1:4737648‑M2/24‑49 (MQ=255) attaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaaa > 1:1652885‑M2/24‑49 (MQ=255) ttaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAAc < 1:7564654‑M2/27‑1 (MQ=255) aaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAg < 1:1058190‑M2/29‑1 (MQ=255) aaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAg < 1:4953275‑M2/29‑1 (MQ=255) aacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAgg < 1:2158378‑M2/30‑1 (MQ=255) aacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAgg < 1:6670173‑M2/30‑1 (MQ=255) acatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaa < 1:6660535‑M2/32‑1 (MQ=255) acatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaa < 1:1749628‑M2/32‑1 (MQ=255) acatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaa > 1:7015534‑M2/19‑50 (MQ=255) acatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATAAAACAGGaa < 1:6704995‑M2/32‑1 (MQ=255) catactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaat < 1:5001615‑M2/33‑1 (MQ=255) catactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaat < 1:5779888‑M2/33‑1 (MQ=255) catactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaat < 1:8505907‑M2/33‑1 (MQ=255) atactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaata < 1:3826883‑M2/34‑1 (MQ=255) atactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaat > 1:7582996‑M2/17‑49 (MQ=255) atactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaat > 1:8227442‑M2/17‑49 (MQ=255) atactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaat > 1:7884641‑M2/17‑49 (MQ=255) tactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa < 1:8310133‑M2/35‑1 (MQ=255) tactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa > 1:3082518‑M2/16‑50 (MQ=255) tactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa < 1:3145629‑M2/35‑1 (MQ=255) tactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa < 1:4244657‑M2/35‑1 (MQ=255) actcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat > 1:4831501‑M2/15‑50 (MQ=255) ctcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat < 1:5935094‑M2/36‑1 (MQ=255) ctcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc < 1:6069341‑M2/37‑1 (MQ=255) tcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc > 1:8330278‑M2/13‑49 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg < 1:4128878‑M2/38‑1 (MQ=255) cgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa > 1:1157857‑M2/10‑50 (MQ=255) cgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa < 1:3521715‑M2/41‑1 (MQ=255) cgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa > 1:4027740‑M2/10‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 1:7783511‑M2/9‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 1:1234780‑M2/9‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 1:2760625‑M2/9‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt < 1:4563528‑M2/42‑1 (MQ=255) agcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg > 1:6239502‑M2/8‑50 (MQ=255) agcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg > 1:6235893‑M2/8‑50 (MQ=255) agcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg < 1:8334034‑M2/43‑1 (MQ=255) agcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg > 1:6456302‑M2/8‑50 (MQ=255) agcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg > 1:5675967‑M2/8‑50 (MQ=255) gcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg < 1:5082027‑M2/44‑1 (MQ=255) gcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg < 1:683904‑M2/44‑1 (MQ=255) gcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg < 1:5244835‑M2/44‑1 (MQ=255) cgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATggg < 1:2658239‑M2/45‑1 (MQ=255) gcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa < 1:3370102‑M2/46‑1 (MQ=255) gcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa > 1:7413445‑M2/5‑50 (MQ=255) cgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt < 1:576318‑M2/47‑1 (MQ=255) cgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt > 1:8356586‑M2/4‑50 (MQ=255) cgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt > 1:1674267‑M2/4‑50 (MQ=255) cgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt < 1:4816409‑M2/47‑1 (MQ=255) gtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg < 1:5521887‑M2/48‑1 (MQ=255) gtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg > 1:5167119‑M2/3‑50 (MQ=255) tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGt < 1:2776928‑M2/49‑1 (MQ=255) tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGt < 1:8359193‑M2/49‑1 (MQ=255) | TAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT > NC_000913/1979281‑1979378 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |