Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 2,798,370 | (TTC)4→3 | coding (124‑126/405 nt) | stpA ← | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 2798361 | 2798363 | 3 | 84 [0] | [0] 86 | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 2798364 = | 0 (0.000) | 76 (0.820) | 49/80 | 0.0 | 100% | coding (132/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
? | NC_000913 | = 2798360 | 0 (0.000) | coding (136/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
AGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCATTT > NC_000913/2798315‑2798413 | gccaggtgctaattttttcctggcgctctgccagttcacgctgctgctgt > 1:3809514‑M1/50‑50 (MQ=255) ccaggtgctaattttttcctggcgctctgccagttcacgctgctgctgtt > 1:223839‑M1/49‑50 (MQ=255) ccaggtgctaattttttcctggcgctctgccagttcacgctgctgctgtt < 1:2915500‑M1/2‑1 (MQ=255) caggtgctaattttttcctggcgctctgccagttcacgctgctgctgttc < 1:3468694‑M1/3‑1 (MQ=255) caggtgctaattttttcctggcgctctgccagttcacgctgctgctgttc < 1:8121715‑M1/3‑1 (MQ=255) tgctaattttttcctggcgctctgccagttcacgctgctgctgttcttct > 1:2689419‑M1/44‑50 (MQ=255) ctaattttttcctggcgctctgccagttcacgctgctgctgttcttcttc > 1:2646742‑M1/42‑50 (MQ=255) taattttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCa < 1:8266541‑M1/10‑1 (MQ=255) aattttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCAc < 1:7846737‑M1/11‑1 (MQ=255) attttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCa > 1:7371283‑M1/39‑48 (MQ=255) attttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCa > 1:273661‑M1/39‑48 (MQ=255) attttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCAc > 1:2630069‑M1/39‑49 (MQ=255) attttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACg > 1:862671‑M1/39‑50 (MQ=255) attttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACg > 1:3561737‑M1/39‑50 (MQ=255) ttttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGt > 1:6116256‑M1/38‑50 (MQ=255) tttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtc < 1:5945736‑M1/14‑1 (MQ=255) tttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtct > 1:8110333‑M1/35‑49 (MQ=255) ttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctt > 1:274270‑M1/34‑49 (MQ=255) ttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctt > 1:7273546‑M1/34‑49 (MQ=255) tcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttc < 1:7417252‑M1/18‑1 (MQ=255) tcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtcttt > 1:7519096‑M1/33‑49 (MQ=255) tcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtcttt > 1:8152123‑M1/33‑49 (MQ=255) tcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtcttt > 1:2944993‑M1/33‑49 (MQ=255) tcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtcttt > 1:1609700‑M1/33‑49 (MQ=255) cctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttct < 1:966709‑M1/19‑1 (MQ=255) cctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttct < 1:5063686‑M1/19‑1 (MQ=255) cctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttc > 1:5597163‑M1/32‑49 (MQ=255) cctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttc > 1:51318‑M1/32‑49 (MQ=255) ctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttctt > 1:2638436‑M1/31‑50 (MQ=255) tggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttctt < 1:6941748‑M1/20‑1 (MQ=255) tggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttctt < 1:6223657‑M1/20‑1 (MQ=255) gcgctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTa > 1:4602532‑M1/28‑49 (MQ=255) gcgctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTa > 1:5706759‑M1/28‑49 (MQ=255) gcgctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTa > 1:3326589‑M1/28‑49 (MQ=255) gcgctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAg < 1:6482791‑M1/23‑1 (MQ=255) gcgctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAg < 1:8187867‑M1/23‑1 (MQ=255) gcgctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAg > 1:1353509‑M1/28‑50 (MQ=255) cgctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGt > 1:7767034‑M1/27‑50 (MQ=255) gctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGt < 1:2643108‑M1/24‑1 (MQ=255) gctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTg > 1:5525765‑M1/26‑50 (MQ=255) ctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGa < 1:3467822‑M1/26‑1 (MQ=255) ctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGa < 1:5858506‑M1/26‑1 (MQ=255) ctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGa < 1:4712265‑M1/26‑1 (MQ=255) tctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGa < 1:4125787‑M1/26‑1 (MQ=255) tctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGa < 1:2456680‑M1/26‑1 (MQ=255) ctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGAc < 1:5464564‑M1/27‑1 (MQ=255) tgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGAc > 1:1055684‑M1/22‑48 (MQ=255) tgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACaa < 1:3802914‑M1/29‑1 (MQ=255) tgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACaa < 1:3109378‑M1/29‑1 (MQ=255) ccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACaa > 1:4007959‑M1/20‑48 (MQ=255) ccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAAcc > 1:3852901‑M1/20‑50 (MQ=255) ccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAAcc > 1:1622351‑M1/20‑50 (MQ=255) ccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAAcc < 1:4061834‑M1/31‑1 (MQ=255) ccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAAcc > 1:2849796‑M1/20‑50 (MQ=255) cagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAAccc < 1:6787809‑M1/32‑1 (MQ=255) cagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAAccc > 1:6057199‑M1/19‑50 (MQ=255) cagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAAccc < 1:4311700‑M1/32‑1 (MQ=255) agttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCt > 1:2541561‑M1/18‑50 (MQ=255) agttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCt > 1:5110530‑M1/18‑50 (MQ=255) gttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCt < 1:3678577‑M1/33‑1 (MQ=255) gttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTg > 1:463611‑M1/17‑50 (MQ=255) ttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGa > 1:7524461‑M1/16‑50 (MQ=255) ttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGa > 1:940447‑M1/16‑50 (MQ=255) tcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGaa < 1:5261844‑M1/36‑1 (MQ=255) tcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGaa < 1:1760697‑M1/36‑1 (MQ=255) acgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtt < 1:923823‑M1/38‑1 (MQ=255) acgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtt > 1:5126676‑M1/13‑50 (MQ=255) acgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAt > 1:781329‑M1/13‑49 (MQ=255) cgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAttt > 1:316419‑M1/12‑50 (MQ=255) cgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAttt > 1:1668499‑M1/12‑50 (MQ=255) gctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtttt < 1:3539994‑M1/40‑1 (MQ=255) gctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtttt < 1:7815875‑M1/40‑1 (MQ=255) gctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtttt > 1:6592182‑M1/11‑50 (MQ=255) gctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtttt > 1:8601147‑M1/11‑50 (MQ=255) ctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTc > 1:1047624‑M1/7‑48 (MQ=255) ctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTc > 1:2434838‑M1/7‑48 (MQ=255) ctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGa > 1:7078959‑M1/7‑50 (MQ=255) ctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGa > 1:5463345‑M1/7‑50 (MQ=255) tgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAg < 1:6506423‑M1/45‑1 (MQ=255) gctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAg < 1:4347375‑M1/45‑1 (MQ=255) ctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCa < 1:941230‑M1/47‑1 (MQ=255) tgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTCCGAGCAt < 1:6620056‑M1/48‑1 (MQ=255) gTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAtt < 1:7033453‑M1/49‑1 (MQ=255) TTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAttt < 1:8452663‑M1/50‑1 (MQ=255) TTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAtt > 1:809323‑M1/1‑49 (MQ=255) TTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAt > 1:4054944‑M1/1‑48 (MQ=255) | AGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCATTT > NC_000913/2798315‑2798413 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |