BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	2,798,370	(TTC)_4→3	coding (124‑126/405 nt)	stpA ←	DNA‑binding transcriptional repressor StpA with RNA chaperone activity

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2798361	2798363	3	84 [0]	[0] 86	stpA	DNA‑binding transcriptional repressor StpA with RNA chaperone activity

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2798364 =	0 (0.000)	76 (0.820)	49/80	0.0	100%	coding (132/405 nt)	stpA	DNA‑binding transcriptional repressor StpA with RNA chaperone activity
*	?	NC_000913	= 2798360	0 (0.000)	76 (0.820)	49/80	0.0	100%	coding (136/405 nt)	stpA	DNA‑binding transcriptional repressor StpA with RNA chaperone activity

AGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCATTT  >  NC_000913/2798315‑2798413

gccaggtgctaattttttcctggcgctctgccagttcacgctgctgctgt                                                   >  1:3809514‑M1/50‑50 (MQ=255)

 ccaggtgctaattttttcctggcgctctgccagttcacgctgctgctgtt                                                  >  1:223839‑M1/49‑50 (MQ=255)

 ccaggtgctaattttttcctggcgctctgccagttcacgctgctgctgtt                                                  <  1:2915500‑M1/2‑1 (MQ=255)

  caggtgctaattttttcctggcgctctgccagttcacgctgctgctgttc                                                 <  1:3468694‑M1/3‑1 (MQ=255)

  caggtgctaattttttcctggcgctctgccagttcacgctgctgctgttc                                                 <  1:8121715‑M1/3‑1 (MQ=255)

      tgctaattttttcctggcgctctgccagttcacgctgctgctgttcttct                                             >  1:2689419‑M1/44‑50 (MQ=255)

        ctaattttttcctggcgctctgccagttcacgctgctgctgttcttcttc                                           >  1:2646742‑M1/42‑50 (MQ=255)

         taattttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCa                                          <  1:8266541‑M1/10‑1 (MQ=255)

          aattttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCAc                                         <  1:7846737‑M1/11‑1 (MQ=255)

           attttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCa                                          >  1:7371283‑M1/39‑48 (MQ=255)

           attttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCa                                          >  1:273661‑M1/39‑48 (MQ=255)

           attttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCAc                                         >  1:2630069‑M1/39‑49 (MQ=255)

           attttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACg                                        >  1:862671‑M1/39‑50 (MQ=255)

           attttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACg                                        >  1:3561737‑M1/39‑50 (MQ=255)

            ttttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGt                                       >  1:6116256‑M1/38‑50 (MQ=255)

             tttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtc                                      <  1:5945736‑M1/14‑1 (MQ=255)

               tttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtct                                     >  1:8110333‑M1/35‑49 (MQ=255)

                ttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctt                                    >  1:274270‑M1/34‑49 (MQ=255)

                ttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctt                                    >  1:7273546‑M1/34‑49 (MQ=255)

                 tcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttc                                  <  1:7417252‑M1/18‑1 (MQ=255)

                 tcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtcttt                                   >  1:7519096‑M1/33‑49 (MQ=255)

                 tcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtcttt                                   >  1:8152123‑M1/33‑49 (MQ=255)

                 tcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtcttt                                   >  1:2944993‑M1/33‑49 (MQ=255)

                 tcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtcttt                                   >  1:1609700‑M1/33‑49 (MQ=255)

                  cctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttct                                 <  1:966709‑M1/19‑1 (MQ=255)

                  cctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttct                                 <  1:5063686‑M1/19‑1 (MQ=255)

                  cctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttc                                  >  1:5597163‑M1/32‑49 (MQ=255)

                  cctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttc                                  >  1:51318‑M1/32‑49 (MQ=255)

                   ctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttctt                                >  1:2638436‑M1/31‑50 (MQ=255)

                    tggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttctt                                <  1:6941748‑M1/20‑1 (MQ=255)

                    tggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttctt                                <  1:6223657‑M1/20‑1 (MQ=255)

                      gcgctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTa                              >  1:4602532‑M1/28‑49 (MQ=255)

                      gcgctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTa                              >  1:5706759‑M1/28‑49 (MQ=255)

                      gcgctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTa                              >  1:3326589‑M1/28‑49 (MQ=255)

                      gcgctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAg                             <  1:6482791‑M1/23‑1 (MQ=255)

                      gcgctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAg                             <  1:8187867‑M1/23‑1 (MQ=255)

                      gcgctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAg                             >  1:1353509‑M1/28‑50 (MQ=255)

                       cgctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGt                            >  1:7767034‑M1/27‑50 (MQ=255)

                        gctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGt                            <  1:2643108‑M1/24‑1 (MQ=255)

                        gctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTg                           >  1:5525765‑M1/26‑50 (MQ=255)

                         ctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGa                          <  1:3467822‑M1/26‑1 (MQ=255)

                         ctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGa                          <  1:5858506‑M1/26‑1 (MQ=255)

                         ctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGa                          <  1:4712265‑M1/26‑1 (MQ=255)

                          tctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGa                          <  1:4125787‑M1/26‑1 (MQ=255)

                          tctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGa                          <  1:2456680‑M1/26‑1 (MQ=255)

                           ctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGAc                         <  1:5464564‑M1/27‑1 (MQ=255)

                            tgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGAc                         >  1:1055684‑M1/22‑48 (MQ=255)

                            tgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACaa                       <  1:3802914‑M1/29‑1 (MQ=255)

                            tgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACaa                       <  1:3109378‑M1/29‑1 (MQ=255)

                              ccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACaa                       >  1:4007959‑M1/20‑48 (MQ=255)

                              ccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAAcc                     >  1:3852901‑M1/20‑50 (MQ=255)

                              ccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAAcc                     >  1:1622351‑M1/20‑50 (MQ=255)

                              ccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAAcc                     <  1:4061834‑M1/31‑1 (MQ=255)

                              ccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAAcc                     >  1:2849796‑M1/20‑50 (MQ=255)

                               cagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAAccc                    <  1:6787809‑M1/32‑1 (MQ=255)

                               cagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAAccc                    >  1:6057199‑M1/19‑50 (MQ=255)

                               cagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAAccc                    <  1:4311700‑M1/32‑1 (MQ=255)

                                agttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCt                   >  1:2541561‑M1/18‑50 (MQ=255)

                                agttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCt                   >  1:5110530‑M1/18‑50 (MQ=255)

                                 gttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCt                   <  1:3678577‑M1/33‑1 (MQ=255)

                                 gttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTg                  >  1:463611‑M1/17‑50 (MQ=255)

                                  ttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGa                 >  1:7524461‑M1/16‑50 (MQ=255)

                                  ttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGa                 >  1:940447‑M1/16‑50 (MQ=255)

                                   tcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGaa                <  1:5261844‑M1/36‑1 (MQ=255)

                                   tcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGaa                <  1:1760697‑M1/36‑1 (MQ=255)

                                     acgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtt              <  1:923823‑M1/38‑1 (MQ=255)

                                     acgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtt              >  1:5126676‑M1/13‑50 (MQ=255)

                                     acgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAt               >  1:781329‑M1/13‑49 (MQ=255)

                                      cgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAttt             >  1:316419‑M1/12‑50 (MQ=255)

                                      cgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAttt             >  1:1668499‑M1/12‑50 (MQ=255)

                                       gctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtttt            <  1:3539994‑M1/40‑1 (MQ=255)

                                       gctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtttt            <  1:7815875‑M1/40‑1 (MQ=255)

                                       gctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtttt            >  1:6592182‑M1/11‑50 (MQ=255)

                                       gctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtttt            >  1:8601147‑M1/11‑50 (MQ=255)

                                           ctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTc          >  1:1047624‑M1/7‑48 (MQ=255)

                                           ctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTc          >  1:2434838‑M1/7‑48 (MQ=255)

                                           ctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGa        >  1:7078959‑M1/7‑50 (MQ=255)

                                           ctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGa        >  1:5463345‑M1/7‑50 (MQ=255)

                                            tgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAg       <  1:6506423‑M1/45‑1 (MQ=255)

                                             gctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAg       <  1:4347375‑M1/45‑1 (MQ=255)

                                              ctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCa     <  1:941230‑M1/47‑1 (MQ=255)

                                               tgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTCCGAGCAt    <  1:6620056‑M1/48‑1 (MQ=255)

                                                gTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAtt   <  1:7033453‑M1/49‑1 (MQ=255)

                                                 TTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAttt  <  1:8452663‑M1/50‑1 (MQ=255)

                                                 TTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAtt   >  1:809323‑M1/1‑49 (MQ=255)

                                                 TTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAt    >  1:4054944‑M1/1‑48 (MQ=255)

AGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCATTT  >  NC_000913/2798315‑2798413

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`