| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908 | 258683 | 776 | 101 [0] | [0] 104 | insB9–[crl] | insB9,insA9,[crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 87 (0.920) | 52/82 | 0.0 | 100% | intergenic (+8/+16) | crl/insB9 | RNA polymerase holoenzyme assembly factor Crl/IS1 transposase B |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | RNA polymerase holoenzyme assembly factor Crl | |||||
Only 100 of 104 total aligned reads displayed.
AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAC > NC_000913/258635‑258733 | agattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaa < 1:2041953‑M2/1‑1 (MQ=255) gattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAg > 1:3272454‑M2/49‑50 (MQ=255) attgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt < 1:1399268‑M2/3‑1 (MQ=255) ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg > 1:737676‑M2/47‑50 (MQ=255) ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg < 1:1234405‑M2/4‑1 (MQ=255) gatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc > 1:5969443‑M2/45‑49 (MQ=255) gatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc > 1:2672338‑M2/45‑49 (MQ=255) gatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc > 1:7405049‑M2/45‑49 (MQ=255) gatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc < 1:4664746‑M2/5‑1 (MQ=255) gatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc > 1:3600733‑M2/45‑49 (MQ=255) gatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc < 1:7377849‑M2/5‑1 (MQ=255) atcaaaaaatttaccgcactaggctcgcatattcgtgaaggcaAGTGCa > 1:5832589‑M2/44‑49 (MQ=255) atcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGaaa < 1:8458592‑M2/7‑1 (MQ=255) atcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCaa < 1:3188277‑M2/7‑1 (MQ=255) atcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCaa < 1:8224324‑M2/7‑1 (MQ=255) tcaaaaaatttaccgcgctaggcccgtatattcgtgaaggtaAGTGCaaa < 1:4213088‑M2/8‑1 (MQ=255) caaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCa > 1:2988961‑M2/42‑47 (MQ=255) aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGa < 1:3424002‑M2/10‑1 (MQ=255) aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGa > 1:6844‑M2/40‑49 (MQ=255) aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGAt < 1:5640054‑M2/11‑1 (MQ=255) aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGAt < 1:2788623‑M2/11‑1 (MQ=255) aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGAt < 1:8453219‑M2/11‑1 (MQ=255) aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGAt < 1:1519927‑M2/11‑1 (MQ=255) aaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATa < 1:4824318‑M2/12‑1 (MQ=255) aaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATaa > 1:6797949‑M2/38‑50 (MQ=255) aaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATaa > 1:1272037‑M2/38‑50 (MQ=255) aatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAt > 1:4256092‑M2/37‑50 (MQ=255) aatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAt < 1:6906470‑M2/14‑1 (MQ=255) tttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATc > 1:4576247‑M2/35‑49 (MQ=255) tttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATc > 1:1123902‑M2/35‑49 (MQ=255) tttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCg < 1:4311129‑M2/16‑1 (MQ=255) ttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGa > 1:5272107‑M2/34‑50 (MQ=255) taccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGa < 1:4350315‑M2/17‑1 (MQ=255) taccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAt > 1:5142427‑M2/33‑50 (MQ=255) taccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAt > 1:5436493‑M2/33‑50 (MQ=255) accgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAt < 1:7395801‑M2/18‑1 (MQ=255) ccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTc < 1:4327316‑M2/20‑1 (MQ=255) cgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCt < 1:1072781‑M2/21‑1 (MQ=255) cgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCt < 1:2833109‑M2/21‑1 (MQ=255) gcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtt > 1:269165‑M2/29‑50 (MQ=255) cactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttt < 1:3202785‑M2/23‑1 (MQ=255) cactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttt > 1:320778‑M2/28‑50 (MQ=255) cactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttt < 1:3420636‑M2/23‑1 (MQ=255) cactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttt < 1:1526816‑M2/23‑1 (MQ=255) actaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtttt > 1:942423‑M2/27‑50 (MQ=255) actaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtttt < 1:1105057‑M2/24‑1 (MQ=255) ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt < 1:4212541‑M2/25‑1 (MQ=255) ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt < 1:7157270‑M2/25‑1 (MQ=255) ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt < 1:7380804‑M2/25‑1 (MQ=255) ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt < 1:6968542‑M2/25‑1 (MQ=255) ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt < 1:2897994‑M2/25‑1 (MQ=255) ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt < 1:6093109‑M2/25‑1 (MQ=255) taggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc > 1:3177280‑M2/25‑50 (MQ=255) taggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc > 1:4746073‑M2/25‑50 (MQ=255) taggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc > 1:353422‑M2/25‑50 (MQ=255) taggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc > 1:1403354‑M2/25‑50 (MQ=255) taggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc > 1:8476347‑M2/25‑50 (MQ=255) aggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc > 1:3254798‑M2/24‑49 (MQ=255) ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGa < 1:3257513‑M2/28‑1 (MQ=255) gcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAt < 1:5603060‑M2/29‑1 (MQ=255) gcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAt < 1:7680140‑M2/29‑1 (MQ=255) cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAtt < 1:8079485‑M2/30‑1 (MQ=255) cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAtt < 1:3687804‑M2/30‑1 (MQ=255) cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAtt < 1:5633157‑M2/30‑1 (MQ=255) ccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTg < 1:6673337‑M2/31‑1 (MQ=255) ccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTg < 1:1258393‑M2/31‑1 (MQ=255) cgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGt > 1:5682200‑M2/19‑50 (MQ=255) cgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGt < 1:3959119‑M2/32‑1 (MQ=255) cgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGt < 1:8500472‑M2/32‑1 (MQ=255) gtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTc < 1:5595806‑M2/33‑1 (MQ=255) gtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTc > 1:2728598‑M2/18‑50 (MQ=255) gtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTc > 1:7204889‑M2/18‑50 (MQ=255) tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTg < 1:5636424‑M2/35‑1 (MQ=255) attcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGc > 1:5679423‑M2/14‑50 (MQ=255) attcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGc > 1:782168‑M2/14‑50 (MQ=255) attcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGc > 1:1090617‑M2/14‑50 (MQ=255) ttcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGc < 1:2669957‑M2/37‑1 (MQ=255) ttcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCt < 1:4587429‑M2/38‑1 (MQ=255) tcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTg > 1:5463159‑M2/12‑50 (MQ=255) cgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTg > 1:5970097‑M2/11‑49 (MQ=255) cgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTg > 1:4212791‑M2/11‑49 (MQ=255) cgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTg < 1:2385523‑M2/39‑1 (MQ=255) gtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTa < 1:4410369‑M2/41‑1 (MQ=255) gtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTa > 1:6392682‑M2/10‑50 (MQ=255) tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAt > 1:5675685‑M2/9‑50 (MQ=255) tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAt < 1:5624628‑M2/42‑1 (MQ=255) tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAt < 1:4778169‑M2/42‑1 (MQ=255) tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAt > 1:4058784‑M2/9‑50 (MQ=255) gaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATg > 1:2375449‑M2/8‑50 (MQ=255) aaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGc > 1:1306799‑M2/7‑50 (MQ=255) aaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGc > 1:8232071‑M2/7‑50 (MQ=255) aaggtaAGTGCAAAGATAAGCGATTCTTTTTCGATTGTCTGGCTGTATg < 1:2443074‑M2/43‑1 (MQ=255) aggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCg < 1:1089560‑M2/45‑1 (MQ=255) aggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCg > 1:4902073‑M2/6‑50 (MQ=255) ggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGt > 1:2593736‑M2/5‑50 (MQ=255) taAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTc > 1:7329116‑M2/3‑49 (MQ=255) aGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCaa < 1:3267272/49‑1 (MQ=255) aGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAc > 1:2914958/1‑50 (MQ=255) aGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAc > 1:1902642/1‑50 (MQ=255) aGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAc > 1:7323626/1‑50 (MQ=255) | AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAC > NC_000913/258635‑258733 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |