| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,997,112 | Δ26,567 bp | [tcyN]–[fliR] | 32 genes [tcyN], tcyL, dcyD, tcyJ, fliZ, fliA, fliC, fliD, fliS, fliT, amyA, yedD, yedE, yedF, yedK, yedL, yedN, intG, fliE, fliF, fliG, fliH, fliI, fliJ, fliK, fliL, fliM, fliN, fliO, fliP, fliQ, [fliR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1997112 | 2023678 | 26567 | 63 [0] | [0] 65 | [tcyN]–[fliR] | [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1997111 | 0 (0.000) | 63 (0.550) | 43/98 | 0.5 | 100% | coding (704/753 nt) | tcyN | cystine ABC transporter ATP binding subunit |
| ? | NC_000913 | 2023679 = | 0 (0.000) | intergenic (+1/‑289) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA | |||||
AATTTTTAATTTGCTGGCTGATATTATTAGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACC > NC_000913/2023630‑2023728 | tattgcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggt > 1:1150241‑M2/50‑50 (MQ=255)tattgcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggt > 1:2622659‑M2/50‑50 (MQ=255) attgcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggtt > 1:488665‑M2/49‑50 (MQ=255) ttgcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggtt < 1:7934336‑M2/2‑1 (MQ=255) ttgcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTc > 1:5334913‑M2/48‑50 (MQ=255) tgcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTcc > 1:2498730‑M2/47‑50 (MQ=255) gcagcagaaacttctcgaggaactggcgggtgcggggctgcccggGTCCg > 1:4121100‑M2/46‑50 (MQ=255) gcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTcc < 1:8197457‑M2/4‑1 (MQ=255) gcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTcc < 1:6417224‑M2/4‑1 (MQ=255) gcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTcc < 1:6358388‑M2/4‑1 (MQ=255) gcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTcc < 1:6157613‑M2/4‑1 (MQ=255) cagcagaaacttctcgaggaactggcgggtgcgcggctgctcggTtccc > 1:3655316‑M2/45‑48 (MQ=255) agcagaaacttctcgaggaactggcgggtgcgaggctgctcggGTCCGt > 1:1412329‑M2/44‑49 (MQ=255) agcagaaacttctcgaggaactggcgggtgcgaggccgctcggTTTCGt > 1:7652740‑M2/44‑49 (MQ=255) gcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTaa < 1:2554933‑M2/8‑1 (MQ=255) gcagaaacttctcgaggaactggcgggtgcgaggctgctcggGTCCGTaa > 1:6999976‑M2/43‑50 (MQ=255) cagaaacttctcgaggaactggcggtggcgaggccgctcggTTCCGTAAc > 1:6749550‑M2/42‑50 (MQ=255) agaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACg > 1:5791627‑M2/41‑50 (MQ=255) agaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACg > 1:8008204‑M2/41‑50 (MQ=255) agaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACg > 1:3391059‑M2/41‑50 (MQ=255) gaaacttctcgaggaactggcgggtgcggggctgctcggGTCCGTAACGt > 1:1705100‑M2/40‑50 (MQ=255) gaaacttctcgaggaactggcgggtgcggggctgctccgTTCCGTAACGt > 1:43440‑M2/40‑50 (MQ=255) gaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACGt < 1:5715639‑M2/11‑1 (MQ=255) gaaacttctcgaggaactggcgggggcgaggctgctcggTTCCGTAAcgg > 1:3695915‑M2/40‑49 (MQ=255) aaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACGtt > 1:2307201‑M2/39‑50 (MQ=255) aacttctcgaggaactggcgggtgcgaggctgctcggTTTCGTAACGttt > 1:7117636‑M2/38‑50 (MQ=255) cttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTAt < 1:1527498‑M2/15‑1 (MQ=255) ctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCAt > 1:7332728‑M2/33‑50 (MQ=255) gaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGt > 1:2037749‑M2/30‑49 (MQ=255) aggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTa < 1:7497284‑M2/22‑1 (MQ=255) aggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTa < 1:6566355‑M2/22‑1 (MQ=255) gaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATc < 1:136283‑M2/24‑1 (MQ=255) aactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATcc > 1:3680831‑M2/26‑50 (MQ=255) gcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAgg < 1:5473727‑M2/30‑1 (MQ=255) gcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAg < 1:64273‑M2/29‑1 (MQ=255) cgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGa > 1:5149155‑M2/20‑50 (MQ=255) cgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGa > 1:2547784‑M2/20‑50 (MQ=255) gggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAt < 1:688220‑M2/32‑1 (MQ=255) ggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAtt < 1:1437111‑M2/33‑1 (MQ=255) gtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTa < 1:6277416‑M2/34‑1 (MQ=255) cgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATcc < 1:6297410‑M2/37‑1 (MQ=255) cgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATc < 1:320544‑M2/36‑1 (MQ=255) gaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCg < 1:555711‑M2/38‑1 (MQ=255) aggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCg > 1:7994227‑M2/12‑49 (MQ=255) aggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCg > 1:3763049‑M2/12‑49 (MQ=255) ggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaa < 1:8008503‑M2/40‑1 (MQ=255) ggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGa > 1:7352498‑M2/11‑49 (MQ=255) gctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaa < 1:24732‑M2/41‑1 (MQ=255) tgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaaaa > 1:5563268‑M2/8‑50 (MQ=255) tgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaaaa > 1:7382248‑M2/8‑50 (MQ=255) gctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaaaa > 1:674934‑M2/7‑49 (MQ=255) gctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaaaa > 1:8347173‑M2/7‑49 (MQ=255) ctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaata < 1:599134‑M2/45‑1 (MQ=255) ctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaat < 1:5425910‑M2/44‑1 (MQ=255) tcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaataa > 1:1342232‑M2/5‑50 (MQ=255) tcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaataa > 1:4882258‑M2/5‑50 (MQ=255) cggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaataa > 1:2047894‑M2/4‑49 (MQ=255) ggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAataata < 1:5486248‑M2/48‑1 (MQ=255) ggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAataata > 1:7232663‑M2/3‑50 (MQ=255) ggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAataata < 1:6657947‑M2/48‑1 (MQ=255) ggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAataata > 1:6574194‑M2/3‑50 (MQ=255) ggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAataata > 1:3845000‑M2/3‑50 (MQ=255) gTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAc < 1:1174571‑M2/49‑1 (MQ=255) ttCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAcc > 1:7644220/1‑50 (MQ=255) ttCCGTAACGTTCATCATGTTATCCTAAGGATTATCCGAAAAATAATAcc > 1:1266764/1‑50 (MQ=255) | AATTTTTAATTTGCTGGCTGATATTATTAGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACC > NC_000913/2023630‑2023728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |