| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,997,112 | Δ26,567 bp | [tcyN]–[fliR] | 32 genes [tcyN], tcyL, dcyD, tcyJ, fliZ, fliA, fliC, fliD, fliS, fliT, amyA, yedD, yedE, yedF, yedK, yedL, yedN, intG, fliE, fliF, fliG, fliH, fliI, fliJ, fliK, fliL, fliM, fliN, fliO, fliP, fliQ, [fliR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1997112 | 2023678 | 26567 | 63 [0] | [0] 65 | [tcyN]–[fliR] | [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1997111 | 0 (0.000) | 63 (0.550) | 43/98 | 0.5 | 100% | coding (704/753 nt) | tcyN | cystine ABC transporter ATP binding subunit |
| ? | NC_000913 | 2023679 = | 0 (0.000) | intergenic (+1/‑289) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA | |||||
TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGGTCGGCAAATAACGCTTTTGCGGCCCCCTGCTCGACTATCCGCCCCTG > NC_000913/1997063‑1997160 | tATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGt > 1:1150241‑M1/1‑49 (MQ=255)tATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGt > 1:2622659‑M1/1‑49 (MQ=255) aTTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGtt > 1:488665‑M1/1‑48 (MQ=255) ttGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttc > 1:5334913‑M1/1‑47 (MQ=255) ttGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGtt < 1:7934336‑M1/49‑3 (MQ=255) tGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttcc > 1:2498730‑M1/1‑46 (MQ=255) gcagcaGAAACTTCTCGAGGAACTGGCGGGTGCGGGGCTGCCCGGgtccg > 1:4121100‑M1/1‑45 (MQ=255) gcagcaGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttcc < 1:6417224‑M1/49‑5 (MQ=255) gcagcaGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttcc < 1:6358388‑M1/49‑5 (MQ=255) gcagcaGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttcc < 1:8197457‑M1/49‑5 (MQ=255) gcagcaGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttcc < 1:6157613‑M1/49‑5 (MQ=255) cagcagAAACTTCTCGAGGAACTGGCGGGTGCGCGGCTGCTCGGttccc > 1:3655316‑M1/1‑44 (MQ=255) agcagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGgtccgt > 1:1412329‑M1/1‑43 (MQ=255) agcagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCCGCTCGGtttcgt > 1:7652740‑M1/1‑43 (MQ=255) gcagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaa < 1:2554933‑M1/50‑9 (MQ=255) gcagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGgtccgtaa > 1:6999976‑M1/1‑42 (MQ=255) cagAAACTTCTCGAGGAACTGGCGGTGGCGAGGCCGCTCGGttccgtaac > 1:6749550‑M1/1‑41 (MQ=255) agAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacg > 1:8008204‑M1/1‑40 (MQ=255) agAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacg > 1:3391059‑M1/1‑40 (MQ=255) agAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacg > 1:5791627‑M1/1‑40 (MQ=255) gAAACTTCTCGAGGAACTGGCGGGTGCGGGGCTGCTCGGgtccgtaacgt > 1:1705100‑M1/1‑39 (MQ=255) gAAACTTCTCGAGGAACTGGCGGGTGCGGGGCTGCTCCGttccgtaacgt > 1:43440‑M1/1‑39 (MQ=255) gAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgt < 1:5715639‑M1/50‑12 (MQ=255) gAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGttccgtaacgg > 1:3695915‑M1/1‑39 (MQ=255) aaaCTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtt > 1:2307201‑M1/1‑38 (MQ=255) aaCTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGtttcgtaacgttt > 1:7117636‑M1/1‑37 (MQ=255) cTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttat < 1:1527498‑M1/50‑16 (MQ=255) ctcGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcat > 1:7332728‑M1/1‑32 (MQ=255) gAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgt > 1:2037749‑M1/1‑29 (MQ=255) aGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgtta < 1:6566355‑M1/50‑23 (MQ=255) aGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgtta < 1:7497284‑M1/50‑23 (MQ=255) gAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatc < 1:136283‑M1/50‑25 (MQ=255) aaCTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcc > 1:3680831‑M1/1‑25 (MQ=255) gCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaagg < 1:5473727‑M1/50‑31 (MQ=255) gCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaag < 1:64273‑M1/49‑30 (MQ=255) cGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaagga > 1:5149155‑M1/1‑19 (MQ=255) cGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaagga > 1:2547784‑M1/1‑19 (MQ=255) gggTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggat < 1:688220‑M1/50‑33 (MQ=255) ggTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggatt < 1:1437111‑M1/50‑34 (MQ=255) gTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggatta < 1:6277416‑M1/50‑35 (MQ=255) cGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatcc < 1:6297410‑M1/50‑38 (MQ=255) cGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatc < 1:320544‑M1/49‑37 (MQ=255) gAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatccg < 1:555711‑M1/50‑39 (MQ=255) aGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatccg > 1:7994227‑M1/1‑11 (MQ=255) aGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatccg > 1:3763049‑M1/1‑11 (MQ=255) ggCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatccgaa < 1:8008503‑M1/50‑41 (MQ=255) ggCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatccga > 1:7352498‑M1/1‑10 (MQ=255) gctgctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaa < 1:24732‑M1/50‑42 (MQ=255) tgctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaa > 1:7382248‑M1/1‑7 (MQ=255) tgctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaa > 1:5563268‑M1/1‑7 (MQ=255) gctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaa > 1:8347173‑M1/1‑6 (MQ=255) gctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaa > 1:674934‑M1/1‑6 (MQ=255) ctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaata < 1:599134‑M1/50‑46 (MQ=255) ctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaat < 1:5425910‑M1/49‑45 (MQ=255) tCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaataa > 1:4882258‑M1/1‑4 (MQ=255) tCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaataa > 1:1342232‑M1/1‑4 (MQ=255) cGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaataa > 1:2047894‑M1/1‑3 (MQ=255) ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataata < 1:5486248‑M1/50‑49 (MQ=255) ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataata > 1:7232663‑M1/1‑2 (MQ=255) ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataata < 1:6657947‑M1/50‑49 (MQ=255) ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataata > 1:6574194‑M1/1‑2 (MQ=255) ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataata > 1:3845000‑M1/1‑2 (MQ=255) gttccgtaacgtttatcatgttatcctaaggattatccgaaaaataatac < 1:1174571‑M1/50‑50 (MQ=255) | TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGGTCGGCAAATAACGCTTTTGCGGCCCCCTGCTCGACTATCCGCCCCTG > NC_000913/1997063‑1997160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |