Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 2,994,992 | Δ3,877 bp | [ygeL]–ygeQ | [ygeL], ygeN, ygeO, insD‑4, insC‑4, ygeP, ygeQ |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 2994992 | 2998868 | 3877 | 111 [0] | [0] 110 | [ygeL]–ygeQ | [ygeL],ygeN,ygeO,insD‑4,insC‑4,ygeP,ygeQ |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 2994991 | 0 (0.000) | 105 (0.960) | 61/94 | 0.0 | 100% | pseudogene (102/156 nt) | ygeL | protein YgeL |
? | NC_000913 | 2998869 = | 0 (0.000) | intergenic (‑41/+115) | ygeQ/glyU | protein YgeQ/tRNA‑Gly |
Only 100 of 110 total aligned reads displayed.
CCCTTTCATAAAATATTCCATCAATCGTTTGTTAAAAGCGTAGATAACCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACAA > NC_000913/2998820‑2998916 | tgtagatttgttacactccgctatagctttcttcagatctttatagccca > 1:6849781‑M2/50‑50 (MQ=255) tgtagatttgttacactccgctatagctttcttcagatctttatagccca > 1:1526421‑M2/50‑50 (MQ=255) gtagatttgttacactccgctatagctttcttcagatctttatagcccAc > 1:5367353‑M2/49‑50 (MQ=255) gtagatttgttacactccgctatagctttcttcagatctttatagcccAc > 1:3022584‑M2/49‑50 (MQ=255) gtagatttgttacactccgctatagctttcttcagatctttatagcccAc > 1:1397226‑M2/49‑50 (MQ=255) gtagatttgttacactccgctatagctttcttcagatctttatagcccAc > 1:4718880‑M2/49‑50 (MQ=255) tagatttgttacactccgctatagctttcttcagatctttatagccca < 1:5516564‑M2/1‑1 (MQ=255) tagatttgttacactccgctatagctttcttcagatctttatagcccAc < 1:3568611‑M2/2‑1 (MQ=255) gatttgttacactccgctatagctttcttcagatctttatagcccACtt < 1:3204939‑M2/4‑1 (MQ=255) gatttgttacactccgctatagctttcttcagatctttatagcccACTTa < 1:7607357‑M2/5‑1 (MQ=255) gatttgttacactccgctatagctttcttcagatctttatagcccACTTa > 1:373821‑M2/46‑50 (MQ=255) gatttgttacactccgctatagctttcttcagatctttatagcccACTTa < 1:5877338‑M2/5‑1 (MQ=255) gatttgttacactccgctatagctttcttcagatctttatagcccACTTa > 1:1402692‑M2/46‑50 (MQ=255) atttgttacactccgctatagctttcttcagatctttatagcccACTTAt > 1:6016278‑M2/45‑50 (MQ=255) tttgttacactccgctatagctttcttcagatctttatagcccACTTAtt < 1:5065269‑M2/7‑1 (MQ=255) ttgttacactccgctatagctttcttcagatctttatagcccACTTAtt > 1:7540087‑M2/43‑49 (MQ=255) tgttacactccgctatagctttcttcagatctttatagcccACTTAttt < 1:2096468‑M2/8‑1 (MQ=255) tgttacactccgctatagctttcttcagatctttatagcccACTTAttt > 1:3451824‑M2/42‑49 (MQ=255) tgttacactccgctatagctttcttcagatctttatagcccACTTAttt < 1:5476667‑M2/8‑1 (MQ=255) gttacactccgctatagctttcttcagatctttatagcccACTTATTTaa > 1:6932580‑M2/41‑50 (MQ=255) tacactccgctatagctttcttcagatctttatagcccACTTATTTaac > 1:2109222‑M2/39‑49 (MQ=255) tacactccgctatagctttcttcagatctttatagcccACTTATTTaac > 1:617684‑M2/39‑49 (MQ=255) acactccgctatagctttcttcagatctttatagcccACTTATTTaacaa > 1:2734536‑M2/38‑50 (MQ=255) acactccgctatagctttcttcagatctttatagcccACTTATTTaaca < 1:5529323‑M2/12‑1 (MQ=255) acactccgctatagctttcttcagatctttatagcccACTTATTTaaca < 1:3887546‑M2/12‑1 (MQ=255) acactccgctatagctttcttcagatctttatagcccACTTATTTaaca < 1:1105948‑M2/12‑1 (MQ=255) acactccgctatagctttcttcagatctttatagcccACTTATTTaaca < 1:6926716‑M2/12‑1 (MQ=255) acactccgctatagctttcttcagatctttatagcccACTTATTTaaca < 1:7140907‑M2/12‑1 (MQ=255) acactccgctatagctttcttcagatctttatagcccACTTATTTaaca < 1:7784105‑M2/12‑1 (MQ=255) acactccgctatagctttcttcagatctttatagcccACTTATTTaaca < 1:2798941‑M2/12‑1 (MQ=255) cactccgctatagctttcttcagatctttatagcccACTTATTTaacaac < 1:6369576‑M2/14‑1 (MQ=255) cactccgctatagctttcttcagatctttatagcccACTTATTTaacaac > 1:4818751‑M2/37‑50 (MQ=255) actccgctatagctttcttcagatctttatagcccACTTATTTAACAACt > 1:3542633‑M2/36‑50 (MQ=255) actccgctatagctttcttcagatctttatagcccACTTATTTAACAACt < 1:1098328‑M2/15‑1 (MQ=255) ctccgctatagctttcttcagatctttatagcccACTTATTTAACAACtt > 1:6078606‑M2/35‑50 (MQ=255) ctccgctatagctttcttcagatctttatagcccACTTATTTAACAACtt > 1:5731731‑M2/35‑50 (MQ=255) ctccgctatagctttcttcagatctttatagcccACTTATTTAACAACtt < 1:8593032‑M2/16‑1 (MQ=255) ccgctatagctttcttcagatctttatagcccACTTATTTAACAACTTg > 1:5946660‑M2/33‑49 (MQ=255) cgctatagctttcttcagatctttatagcccACTTATTTAACAACTTg < 1:5322900‑M2/17‑1 (MQ=255) cgctatagctttcttcagatctttatagcccACTTATTTAACAACTTg < 1:6559118‑M2/17‑1 (MQ=255) cgctatagctttcttcagatctttatagcccACTTATTTAACAACTTg < 1:7084763‑M2/17‑1 (MQ=255) cgctatagctttcttcagatctttatagcccACTTATTTAACAACTTGa > 1:7270621‑M2/32‑49 (MQ=255) cgctatagctttcttcagatctttatagcccACTTATTTAACAACTTGa < 1:5077429‑M2/18‑1 (MQ=255) cgctatagctttcttcagatctttatagcccACTTATTTAACAACTTGa > 1:3703758‑M2/32‑49 (MQ=255) gctatagctttcttcagatctttatagcccACTTATTTAACAACTTGaaa < 1:4674670‑M2/20‑1 (MQ=255) ctatagctttcttcagatctttatagcccACTTATTTAACAACTTGaaaa > 1:2774397‑M2/30‑50 (MQ=255) ctatagctttcttcagatctttatagcccACTTATTTAACAACTTGaaaa < 1:2721981‑M2/21‑1 (MQ=255) ctatagctttcttcagatctttatagcccACTTATTTAACAACTTGaaaa < 1:7851474‑M2/21‑1 (MQ=255) tatagctttcttcagatctttatagcccACTTATTTAACAACTTGaaaa > 1:272537‑M2/29‑49 (MQ=255) tatagctttcttcagatctttatagcccACTTATTTAACAACTTGaaaa > 1:4853893‑M2/29‑49 (MQ=255) tatagctttcttcagatctttatagcccACTTATTTAACAACTTGaaaa > 1:304579‑M2/29‑49 (MQ=255) tatagctttcttcagatctttatagcccACTTATTTAACAACTTGaaaa > 1:1843363‑M2/29‑49 (MQ=255) tatagctttcttcagatctttatagcccACTTATTTAACAACTTGaaaa > 1:1655580‑M2/29‑49 (MQ=255) tatagctttcttcagatctttatagcccACTTATTTAACAACTTGaaaa > 1:1447701‑M2/29‑49 (MQ=255) atagctttcttcagatctttatagcccACTTATTTAACAACTTGAAAAt > 1:5859727‑M2/28‑49 (MQ=255) tagctttcttcagatctttatagcccACTTATTTAACAACTTGAAAAt < 1:5295740‑M2/22‑1 (MQ=255) tagctttcttcagatctttatagcccACTTATTTAACAACTTGAAAATaa < 1:6881725‑M2/24‑1 (MQ=255) agctttcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAg > 1:788493‑M2/26‑50 (MQ=255) gctttcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAgg < 1:6708145‑M2/26‑1 (MQ=255) gctttcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAgg > 1:1795832‑M2/25‑50 (MQ=255) gctttcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAgg > 1:1009495‑M2/25‑50 (MQ=255) tttcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGgtg > 1:7862938‑M2/23‑50 (MQ=255) tttcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGgtg > 1:1071476‑M2/23‑50 (MQ=255) tttcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGgtg > 1:2550613‑M2/23‑50 (MQ=255) tcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGgtgt < 1:5762948‑M2/29‑1 (MQ=255) tcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGgtgt < 1:5305621‑M2/29‑1 (MQ=255) tcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGgtg < 1:6568795‑M2/28‑1 (MQ=255) tcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGtt > 1:1767516‑M2/21‑50 (MQ=255) cttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGttt > 1:845169‑M2/20‑50 (MQ=255) cttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGttt > 1:3367702‑M2/20‑50 (MQ=255) cttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGtt < 1:5460460‑M2/30‑1 (MQ=255) cttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGtt < 1:6075638‑M2/30‑1 (MQ=255) agatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTAcc > 1:4347827‑M2/16‑50 (MQ=255) agatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTAc < 1:207295‑M2/34‑1 (MQ=255) gatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCt > 1:1163488‑M2/15‑50 (MQ=255) atctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTg > 1:8125610‑M2/14‑50 (MQ=255) tctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTgg > 1:2483522‑M2/13‑50 (MQ=255) tctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTgg > 1:7628122‑M2/13‑50 (MQ=255) tttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgt > 1:2932245‑M2/11‑50 (MQ=255) tttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgt > 1:6950301‑M2/11‑50 (MQ=255) tatagcccACTTATTTAACAACTTGAAAATAAGGTGtttt < 1:1197217‑M2/32‑1 (MQ=255) tatagcccACTTATTTAACAACTTGAAAATAAGGTGtttt < 1:4704015‑M2/32‑1 (MQ=255) tatagcccACTTATTTAACAACTTGAAAATAAGGTGtttt < 1:641453‑M2/32‑1 (MQ=255) tatagcccACTTATTTAACAACTTGAAAATAAGGTGtttt < 1:514810‑M2/32‑1 (MQ=255) tatagcccACTTATTTAACAACTTGAAAATAAGGTGtttt < 1:5172406‑M2/32‑1 (MQ=255) tatagcccACTTATTTAACAACTTGAAAATAAGGTGtttt < 1:5227105‑M2/32‑1 (MQ=255) tatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTg < 1:235608‑M2/37‑1 (MQ=255) tatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgtt < 1:4983435‑M2/41‑1 (MQ=255) tagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgttgtt < 1:6415520‑M2/44‑1 (MQ=255) tagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgttgtt < 1:637265‑M2/44‑1 (MQ=255) tagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgttgt < 1:8133004‑M2/43‑1 (MQ=255) gcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTa > 1:8256524‑M2/5‑49 (MQ=255) gcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTa < 1:769100‑M2/45‑1 (MQ=255) cccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTAc > 1:342138‑M2/4‑49 (MQ=255) cccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTAc > 1:2971028‑M2/4‑49 (MQ=255) ccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACaa < 1:5617036‑M2/48‑1 (MQ=255) ccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACa > 1:5881477‑M2/3‑49 (MQ=255) cACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACaa > 1:8189953‑M2/2‑49 (MQ=255) cACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACaa > 1:5118086‑M2/2‑49 (MQ=255) aCTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACaa > 1:3973897/1‑48 (MQ=255) | CCCTTTCATAAAATATTCCATCAATCGTTTGTTAAAAGCGTAGATAACCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACAA > NC_000913/2998820‑2998916 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |