BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,761,993	Δ8,250 bp		rhsA–yibV	rhsA, yibA, yibJ, yibG, yibS, yibV

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3761993	3770242	8250	144 [0]	[0] 142	rhsA–yibV	rhsA,yibA,yibJ,yibG,yibS,yibV

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3761992	0 (0.000)	133 (1.190)	70/96	0.0	100%	intergenic (‑37/‑191)	yibF/rhsA	glutathione transferase‑like protein YibF/rhs element protein RhsA
*	?	NC_000913	3770243 =	0 (0.000)	133 (1.190)	70/96	0.0	100%	coding (1137/1137 nt)	yibH	inner membrane protein YibH

Only 100 of 142 total aligned reads displayed.

ATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGC  >  NC_000913/3770194‑3770291

gacgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggct                                                  >  1:2783735‑M2/50‑50 (MQ=255)

gacgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggct                                                  <  1:225019‑M2/1‑1 (MQ=255)

 acgagtttcatgccgagtcctttgtgcgaggcaaaatatcagtatggct                                                  >  1:2130652‑M2/49‑49 (MQ=255)

 acgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggct                                                  >  1:4130969‑M2/49‑49 (MQ=255)

  cgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCa                                                <  1:498833‑M2/3‑1 (MQ=255)

  cgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCa                                                <  1:1526777‑M2/3‑1 (MQ=255)

  cgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCa                                                <  1:5944245‑M2/3‑1 (MQ=255)

    agtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAAt                                              >  1:2597683‑M2/46‑50 (MQ=255)

    agtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAAt                                              <  1:4213684‑M2/5‑1 (MQ=255)

     gtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATg                                             <  1:6733225‑M2/6‑1 (MQ=255)

     gtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATg                                             <  1:6555087‑M2/6‑1 (MQ=255)

      tttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGa                                            <  1:3335429‑M2/7‑1 (MQ=255)

      tttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGa                                            <  1:3103270‑M2/7‑1 (MQ=255)

        tcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGAt                                           <  1:3219026‑M2/8‑1 (MQ=255)

          atgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATcc                                         >  1:7214372‑M2/40‑49 (MQ=255)

          atgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCa                                        <  1:6489959‑M2/11‑1 (MQ=255)

          atgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCa                                        <  1:2990353‑M2/11‑1 (MQ=255)

           tgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCaa                                       <  1:3418852‑M2/12‑1 (MQ=255)

           tgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCa                                        >  1:1853175‑M2/39‑49 (MQ=255)

             ccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCaaa                                      <  1:8435636‑M2/13‑1 (MQ=255)

              cgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAAt                                     >  1:5334670‑M2/36‑49 (MQ=255)

              cgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAAt                                     >  1:2736249‑M2/36‑49 (MQ=255)

              cgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATa                                    <  1:1442187‑M2/15‑1 (MQ=255)

                agtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAGATaaa                                  <  1:4043891‑M2/17‑1 (MQ=255)

                agtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATaaa                                  <  1:3307504‑M2/17‑1 (MQ=255)

                agtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATaaa                                  <  1:8584937‑M2/17‑1 (MQ=255)

                agtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATaaa                                  <  1:2350972‑M2/17‑1 (MQ=255)

                agtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATaaa                                  <  1:3458195‑M2/17‑1 (MQ=255)

                agtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATaaa                                  <  1:7875518‑M2/17‑1 (MQ=255)

                 gtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATa                                    >  1:4460815‑M2/33‑47 (MQ=255)

                 gtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAg                                 <  1:4005547‑M2/18‑1 (MQ=255)

                 gtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAg                                 <  1:5810277‑M2/18‑1 (MQ=255)

                  tcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATa                                    >  1:4754100‑M2/32‑46 (MQ=255)

                   cctttgtgctaggaaaaatatcagtatggcTCAATGATCCAAATAAAGa                                >  1:8217794‑M2/31‑49 (MQ=255)

                   cctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGa                                >  1:3948464‑M2/31‑49 (MQ=255)

                    ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGAt                               <  1:2441607‑M2/20‑1 (MQ=255)

                    ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATa                              <  1:796092‑M2/21‑1 (MQ=255)

                    ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATa                              <  1:2220438‑M2/21‑1 (MQ=255)

                     tttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATaa                             >  1:1796462‑M2/29‑50 (MQ=255)

                      ttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAAt                            >  1:6833883‑M2/28‑50 (MQ=255)

                       tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATaa                             <  1:1790962‑M2/22‑1 (MQ=255)

                       tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATaa                             <  1:3512684‑M2/22‑1 (MQ=255)

                       tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAAt                            <  1:6132843‑M2/23‑1 (MQ=255)

                        gtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg                           <  1:1046532‑M2/24‑1 (MQ=255)

                        gtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg                           <  1:1855385‑M2/24‑1 (MQ=255)

                         tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCa                         >  1:2516740‑M2/25‑50 (MQ=255)

                           cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGGTAATGCAt                        <  1:231930‑M2/27‑1 (MQ=255)

                           cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCAt                        <  1:739294‑M2/27‑1 (MQ=255)

                           cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCAt                        <  1:2796715‑M2/27‑1 (MQ=255)

                           cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc                       >  1:7316242‑M2/23‑50 (MQ=255)

                           cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc                       <  1:6286041‑M2/28‑1 (MQ=255)

                            gaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATcc                      <  1:4587641‑M2/29‑1 (MQ=255)

                            gaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc                       >  1:6045842‑M2/22‑49 (MQ=255)

                             aggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc                       >  1:1371175‑M2/21‑48 (MQ=255)

                             aggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc                       >  1:1747812‑M2/21‑48 (MQ=255)

                              ggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAg                    <  1:7630642‑M2/31‑1 (MQ=255)

                              ggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAg                    <  1:6252741‑M2/31‑1 (MQ=255)

                                aaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCt                  >  1:7912479‑M2/18‑50 (MQ=255)

                                 aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg                 <  1:7028531‑M2/34‑1 (MQ=255)

                                 aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg                 >  1:2338916‑M2/17‑50 (MQ=255)

                                 aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg                 <  1:4409682‑M2/34‑1 (MQ=255)

                                 aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg                 >  1:6110970‑M2/17‑50 (MQ=255)

                                  aaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTgg                <  1:4254087‑M2/35‑1 (MQ=255)

                                   aatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt               >  1:2043842‑M2/15‑50 (MQ=255)

                                   aatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt               <  1:1099130‑M2/36‑1 (MQ=255)

                                    atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt               >  1:5499328‑M2/14‑49 (MQ=255)

                                    atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt               >  1:5083512‑M2/14‑49 (MQ=255)

                                    atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTc              <  1:1887186‑M2/37‑1 (MQ=255)

                                    atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTc              <  1:5211261‑M2/37‑1 (MQ=255)

                                    atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTc              <  1:6996682‑M2/37‑1 (MQ=255)

                                      atcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAt            >  1:2884037‑M2/12‑50 (MQ=255)

                                      atcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAt            >  1:298459‑M2/12‑50 (MQ=255)

                                       tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAtt           <  1:3820508‑M2/40‑1 (MQ=255)

                                       tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAtt           >  1:1409277‑M2/11‑50 (MQ=255)

                                       tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAtt           >  1:6408962‑M2/11‑50 (MQ=255)

                                       tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAtt           >  1:3371198‑M2/11‑50 (MQ=255)

                                       tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAt            <  1:7868364‑M2/39‑1 (MQ=255)

                                       tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAt            <  1:5929948‑M2/39‑1 (MQ=255)

                                       tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAt            <  1:4281094‑M2/39‑1 (MQ=255)

                                       tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAt            <  1:2102932‑M2/39‑1 (MQ=255)

                                        cagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTc          >  1:2070773‑M2/10‑50 (MQ=255)

                                         agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTc          <  1:3780249‑M2/41‑1 (MQ=255)

                                         agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt         <  1:7603148‑M2/42‑1 (MQ=255)

                                         agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt         <  1:3464358‑M2/42‑1 (MQ=255)

                                         agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt         >  1:468657‑M2/9‑50 (MQ=255)

                                         agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt         <  1:2592880‑M2/42‑1 (MQ=255)

                                         agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt         >  1:7175936‑M2/9‑50 (MQ=255)

                                         agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt         >  1:7206674‑M2/9‑50 (MQ=255)

                                         agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt         >  1:1450538‑M2/9‑50 (MQ=255)

                                          gtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt         >  1:564965‑M2/8‑49 (MQ=255)

                                           tatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt         >  1:19708‑M2/7‑48 (MQ=255)

                                           tatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTa       <  1:676845‑M2/44‑1 (MQ=255)

                                             tggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagc     <  1:1697481‑M2/46‑1 (MQ=255)

                                             tggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTag      >  1:1110918‑M2/5‑49 (MQ=255)

                                             tggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTag      <  1:5086694‑M2/45‑1 (MQ=255)

                                               gcTCAATGCTCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag   >  1:6194914‑M2/3‑50 (MQ=255)

                                                cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcagc  <  1:1973917‑M2/49‑1 (MQ=255)

                                                cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcagc  <  1:2882571‑M2/49‑1 (MQ=255)

                                                cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag   >  1:2129162‑M2/2‑49 (MQ=255)

                                                cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag   >  1:3348622‑M2/2‑49 (MQ=255)

ATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGC  >  NC_000913/3770194‑3770291

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.