BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,720,634	Δ1,442 bp	IS150‑mediated	insJ–insK	insJ, insK

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3720634	3722075	1442	115 [0]	[0] 110	insJ–insK	insJ,insK

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3720633	0 (0.000)	109 (0.960)	57/98	0.0	100%	noncoding (1/1443 nt)	IS150	repeat region
*	?	NC_000913	3722076 =	0 (0.000)	109 (0.960)	57/98	0.0	100%	intergenic (+27/+252)	insK/glyS	IS150 conserved protein InsB/glycine‑‑tRNA ligase subunit beta

Only 100 of 115 total aligned reads displayed.

CTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT  >  NC_000913/3720584‑3720681

cTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                                  >  1:4429275/1‑49 (MQ=255)

cTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                                  >  1:3459691/1‑49 (MQ=255)

 tataTTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaa                                                >  1:4737054‑M1/1‑48 (MQ=255)

  atatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaac                                               >  1:6468385‑M1/1‑47 (MQ=255)

  atatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaac                                               >  1:7054843‑M1/1‑47 (MQ=255)

  atatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaac                                               >  1:7855803‑M1/1‑47 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCGTCCTGTGTTGATTTCCAACGAGTAt                                                  <  1:2280143/46‑1 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                                  <  1:1149709/46‑1 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                                  <  1:1944817/46‑1 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                                  <  1:7747875/46‑1 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaact                                              <  1:4955972‑M1/50‑5 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaac                                               <  1:1192730‑M1/49‑4 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaa                                                <  1:2601150‑M1/48‑3 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaa                                                <  1:2373674‑M1/48‑3 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaa                                                <  1:2213429‑M1/48‑3 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATa                                                 <  1:2572710‑M1/47‑2 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATa                                                 <  1:961739‑M1/47‑2 (MQ=255)

    atTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactt                                             >  1:3301301‑M1/1‑45 (MQ=255)

     tttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCTACGAGTATaacttt                                            >  1:3902652‑M1/1‑44 (MQ=255)

     tttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt                                            <  1:2043832‑M1/50‑7 (MQ=255)

     tttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt                                            >  1:1488948‑M1/1‑44 (MQ=255)

     tttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactt                                             <  1:4551279‑M1/49‑6 (MQ=255)

      ttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt                                            >  1:217677‑M1/1‑43 (MQ=255)

      ttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt                                            >  1:7384078‑M1/1‑43 (MQ=255)

      ttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt                                            >  1:7519795‑M1/1‑43 (MQ=255)

       tCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttga                                          >  1:4225234‑M1/1‑42 (MQ=255)

       tCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttg                                           <  1:6926663‑M1/49‑8 (MQ=255)

            cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                      >  1:7688820‑M1/2‑38 (MQ=255)

            cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                      >  1:7730216‑M1/2‑38 (MQ=255)

            cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                      >  1:4376652‑M1/2‑38 (MQ=255)

            cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattt                                       <  1:7540620‑M1/48‑12 (MQ=255)

            cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattt                                       <  1:1068398‑M1/48‑12 (MQ=255)

            cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatt                                        <  1:1458703‑M1/47‑11 (MQ=255)

            cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgat                                         <  1:1201915‑M1/46‑10 (MQ=255)

            cgcATT‑CCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttat                                     <  1:7520723‑M1/49‑14 (MQ=255)

             gCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                      >  1:3890734‑M1/1‑37 (MQ=255)

              cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttata                                    <  1:5370025‑M1/50‑15 (MQ=255)

              cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttata                                    <  1:8214645‑M1/50‑15 (MQ=255)

              cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttata                                    <  1:8537261‑M1/50‑15 (MQ=255)

              cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                      >  1:7842411‑M1/1‑36 (MQ=255)

              cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                      >  1:5440916‑M1/1‑36 (MQ=255)

              cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                      >  1:4871507‑M1/1‑36 (MQ=255)

               aTTCCCAGCCTCCTGTGTTGATTTCTAACGAGTATaactttgatttatag                                   >  1:934132‑M1/1‑35 (MQ=255)

               aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatag                                   <  1:4888646‑M1/50‑16 (MQ=255)

               aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatag                                   <  1:3083234‑M1/50‑16 (MQ=255)

               aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatag                                   >  1:5208746‑M1/1‑35 (MQ=255)

               aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatag                                   <  1:3217589‑M1/50‑16 (MQ=255)

               aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatag                                   <  1:3274136‑M1/50‑16 (MQ=255)

               aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatag                                   <  1:1295927‑M1/50‑16 (MQ=255)

               aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatag                                   >  1:1122069‑M1/1‑35 (MQ=255)

                ttCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagt                                  <  1:1459732‑M1/50‑17 (MQ=255)

                ttCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagt                                  >  1:1972507‑M1/1‑34 (MQ=255)

                  cccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtc                                 <  1:7789087‑M1/49‑18 (MQ=255)

                  cccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagt                                  >  1:7504157‑M1/1‑32 (MQ=255)

                  cccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagt                                  >  1:5679114‑M1/1‑32 (MQ=255)

                  cccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagt                                  >  1:52177‑M1/1‑32 (MQ=255)

                   ccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcag                               >  1:5223340‑M1/1‑31 (MQ=255)

                   ccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtca                                <  1:1495070‑M1/49‑19 (MQ=255)

                   ccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtca                                <  1:6875474‑M1/49‑19 (MQ=255)

                    cAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcagg                              >  1:7143743‑M1/1‑30 (MQ=255)

                     aGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggt                             <  1:3518200‑M1/50‑22 (MQ=255)

                      gCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtg                            <  1:2741280‑M1/50‑23 (MQ=255)

                      gCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtg                            <  1:7337197‑M1/50‑23 (MQ=255)

                      gCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtg                            <  1:4615467‑M1/50‑23 (MQ=255)

                       cctcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtgg                           <  1:1114814‑M1/50‑24 (MQ=255)

                       cctcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtgg                           >  1:5700450‑M1/1‑27 (MQ=255)

                       cctcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtgg                           >  1:3219757‑M1/1‑27 (MQ=255)

                        ctcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtggg                          <  1:4081803‑M1/50‑25 (MQ=255)

                         tcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtgggg                         >  1:7134080‑M1/1‑25 (MQ=255)

                           ctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtggggct                       >  1:396794‑M1/1‑23 (MQ=255)

                           ctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtggggct                       <  1:7303425‑M1/50‑28 (MQ=255)

                           ctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtggggc                        <  1:8032384‑M1/49‑27 (MQ=255)

                           ctGTGTTGATTCCCAACGAGTATaactttgatttatagtcaggtggggct                       >  1:6832926‑M1/1‑23 (MQ=255)

                            tgtgTTGATTTCCAACGAGTATaactttgatttatagtcaggtggggctt                      >  1:1228388‑M1/1‑22 (MQ=255)

                             gtgtTGATTTCCAACGAGTATaactttgatttatagtcaggtggggcttt                     >  1:4887945‑M1/1‑21 (MQ=255)

                              tgtTGATTTCCAACGAGTATaactttgatttatagtcaggtggggcttt                     <  1:4011908‑M1/49‑30 (MQ=255)

                              tgtTGATTTCCAACGAGTATaactttgatttatagtcaggtggggctt                      <  1:5096041‑M1/48‑29 (MQ=255)

                                ttGATTTCCAACGAGTATaactttgatttatagtcaggtggggcttttct                  <  1:8520567‑M1/50‑33 (MQ=255)

                                  gATTTCCAACGAGTATaactttgatttatagtcaggtggggcttttctct                >  1:518649‑M1/1‑16 (MQ=255)

                                  gATTTCCAACGAGTATaactttgatttatagtcaggtggggcttttctct                >  1:156948‑M1/1‑16 (MQ=255)

                                   aTTTCCAACGAGTATaactttgatttatagtcaggtggggcttttctct                <  1:6890757‑M1/49‑35 (MQ=255)

                                       ccAACGAGTATaactttgatttatagtcaggtggggcttttctctgtctg           >  1:5948159‑M1/1‑11 (MQ=255)

                                       ccAACGAGTATaactttgatttatagtcaggtggggcttttctctgtct            <  1:4348705‑M1/49‑39 (MQ=255)

                                       ccAACGAGTATaactttgatttatagtcaggtggggcttttctctgtct            <  1:6146891‑M1/49‑39 (MQ=255)

                                        cAACGAGTATaactttgatttatagtcaggtggggcttttctctgtctgc          <  1:3895453‑M1/50‑41 (MQ=255)

                                        cAACGAGTATaactttgatttatagtcaggtggggcttttctctgtctg           <  1:4180519‑M1/49‑40 (MQ=255)

                                          aCGAGTATaactttgatttatagtcaggtggggcttttctctgtctgcct        <  1:7300788‑M1/50‑43 (MQ=255)

                                          aCGAGTATaactttgatttatagtcaggtggggcttttctctgtctgcct        >  1:2222448‑M1/1‑8 (MQ=255)

                                          aCGAGTATaactttgatttatagtcaggtggggcttttctctgtctgcct        <  1:2780072‑M1/50‑43 (MQ=255)

                                           cGAGTATaactttgatttatagtcaggtggggcttttctctgtctgcctt       <  1:5561708‑M1/50‑44 (MQ=255)

                                            gAGTATaactttgatttatagtcaggtggggcttttctctgtctgccttt      <  1:1073935‑M1/50‑45 (MQ=255)

                                            gAGTATaactttgatttatagtcaggtggggcttttctctgtctgccttt      <  1:6868250‑M1/50‑45 (MQ=255)

                                              gTATaactttgatttatagtcaggtggggcttttctctgtctgcctttcg    >  1:7136430‑M1/1‑4 (MQ=255)

                                              gTATaactttgatttatagtcaggtggggcttttctctgtctgcctttcg    <  1:5286727‑M1/50‑47 (MQ=255)

                                               tataactttgatttatagtcaggtggggcttttctctgtctgcctttcgg   <  1:5212346‑M1/50‑48 (MQ=255)

                                               tataactttgatttatagtcaggtggggcttttctctgtctgcctttcgg   >  1:4407406‑M1/1‑3 (MQ=255)

                                                ataactttgatttatagtcaggtggggcttttctctgtctgtctttcggt  >  1:961822‑M1/1‑2 (MQ=255)

                                                ataactttgatttatagtcaggtggggcttttctctgtctgcctttcggt  >  1:839301‑M1/1‑2 (MQ=255)

                                                ataactttgatttatagtcaggtggggcttttctctgtctgcctttcggt  >  1:2638819‑M1/1‑2 (MQ=255)

                                                 taactttgatttatagtcaggtggggcttttctctgtctgcctttcggt  <  1:1731413‑M1/49‑49 (MQ=255)

CTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT  >  NC_000913/3720584‑3720681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`