BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,720,634	Δ1,442 bp	IS150‑mediated	insJ–insK	insJ, insK

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3720634	3722075	1442	115 [0]	[0] 110	insJ–insK	insJ,insK

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3720633	0 (0.000)	109 (0.960)	57/98	0.0	100%	noncoding (1/1443 nt)	IS150	repeat region
*	?	NC_000913	3722076 =	0 (0.000)	109 (0.960)	57/98	0.0	100%	intergenic (+27/+252)	insK/glyS	IS150 conserved protein InsB/glycine‑‑tRNA ligase subunit beta

Only 100 of 110 total aligned reads displayed.

GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTG  >  NC_000913/3722028‑3722124

tatatttctgcgcattcccagcctcctgtgttgatttccaacgagtataa                                                 >  1:4737054‑M2/49‑50 (MQ=255)

 atatttctgcgcattcccagcctcctgtgttgatttccaacgagtatAAc                                                >  1:7855803‑M2/48‑50 (MQ=255)

 atatttctgcgcattcccagcctcctgtgttgatttccaacgagtatAAc                                                >  1:6468385‑M2/48‑50 (MQ=255)

 atatttctgcgcattcccagcctcctgtgttgatttccaacgagtatAAc                                                >  1:7054843‑M2/48‑50 (MQ=255)

  tatttctgcgcattcccagcctcctgtgttgatttccaacgagtataa                                                 <  1:2601150‑M2/2‑1 (MQ=255)

  tatttctgcgcattcccagcctcctgtgttgatttccaacgagtataa                                                 <  1:2373674‑M2/2‑1 (MQ=255)

  tatttctgcgcattcccagcctcctgtgttgatttccaacgagtataa                                                 <  1:2213429‑M2/2‑1 (MQ=255)

  tatttctgcgcattcccagcctcctgtgttgatttccaacgagtata                                                  <  1:5067334‑M2/1‑1 (MQ=255)

  tatttctgcgcattcccagcctcctgtgttgatttccaacgagtata                                                  <  1:2572710‑M2/1‑1 (MQ=255)

  tatttctgcgcattcccagcctcctgtgttgatttccaacgagtata                                                  <  1:961739‑M2/1‑1 (MQ=255)

  tatttctgcgcattcccagcctcctgtgttgatttccaacgagtatAAc                                                <  1:1192730‑M2/3‑1 (MQ=255)

  tatttctgcgcattcccagcctcctgtgttgatttccaacgagtatAACt                                               <  1:4955972‑M2/4‑1 (MQ=255)

   atttctgcgcattcccagcctcctgtgttgatttccaacgagtatAACtt                                              >  1:3301301‑M2/46‑50 (MQ=255)

    tttctgcgcattcccagcctcctgtgttgatttcctacgagtatAACttt                                             >  1:3902652‑M2/45‑50 (MQ=255)

    tttctgcgcattcccagcctcctgtgttgatttccaacgagtatAACttt                                             >  1:1488948‑M2/45‑50 (MQ=255)

    tttctgcgcattcccagcctcctgtgttgatttccaacgagtatAACttt                                             <  1:2043832‑M2/6‑1 (MQ=255)

    tttctgcgcattcccagcctcctgtgttgatttccaacgagtatAACtt                                              <  1:4551279‑M2/5‑1 (MQ=255)

     ttctgcgcattcccagcctcctgtgttgatttccaacgagtatAACttt                                             >  1:7519795‑M2/44‑49 (MQ=255)

     ttctgcgcattcccagcctcctgtgttgatttccaacgagtatAACttt                                             >  1:7384078‑M2/44‑49 (MQ=255)

     ttctgcgcattcccagcctcctgtgttgatttccaacgagtatAACttt                                             >  1:217677‑M2/44‑49 (MQ=255)

      tctgcgcattcccagcctcctgtgttgatttccaacgagtatAACTTTg                                            <  1:6926663‑M2/7‑1 (MQ=255)

      tctgcgcattcccagcctcctgtgttgatttccaacgagtatAACTTTGa                                           >  1:4225234‑M2/43‑50 (MQ=255)

          cgcattcccagcctcctgtgttgatttccaacgagtatAACTTTGAttt                                        <  1:7540620‑M2/11‑1 (MQ=255)

          cgcattcccagcctcctgtgttgatttccaacgagtatAACTTTGAttt                                        <  1:1068398‑M2/11‑1 (MQ=255)

          cgcattcccagcctcctgtgttgatttccaacgagtatAACTTTGAt                                          <  1:1201915‑M2/9‑1 (MQ=255)

          cgcattcccagcctcctgtgttgatttccaacgagtatAACTTTGATTta                                       >  1:4376652‑M2/39‑50 (MQ=255)

          cgcattcccagcctcctgtgttgatttccaacgagtatAACTTTGATTta                                       >  1:7730216‑M2/39‑50 (MQ=255)

          cgcattcccagcctcctgtgttgatttccaacgagtatAACTTTGATTta                                       >  1:7688820‑M2/39‑50 (MQ=255)

           gcattcccagcctcctgtgttgatttccaacgagtatAACTTTGATTta                                       >  1:2743544‑M2/38‑49 (MQ=255)

           gcattcccagcctcctgtgttgatttccaacgagtatAACTTTGATTta                                       >  1:3890734‑M2/38‑49 (MQ=255)

           cgcattccagcctcctgtgttgatttccaacgagtatAACTTTGATTtat                                      <  1:7520723‑M2/13‑1 (MQ=255)

            cattcccagcctcctgtgttgatttccaacgagtatAACTTTGATTtata                                     <  1:8537261‑M2/14‑1 (MQ=255)

            cattcccagcctcctgtgttgatttccaacgagtatAACTTTGATTtata                                     <  1:5370025‑M2/14‑1 (MQ=255)

            cattcccagcctcctgtgttgatttccaacgagtatAACTTTGATTtata                                     <  1:8214645‑M2/14‑1 (MQ=255)

            cattcccagcctcctgtgttgatttccaacgagtatAACTTTGATTta                                       >  1:5440916‑M2/37‑48 (MQ=255)

            cattcccagcctcctgtgttgatttccaacgagtatAACTTTGATTta                                       >  1:4871507‑M2/37‑48 (MQ=255)

            cattcccagcctcctgtgttgatttccaacgagtatAACTTTGATTta                                       >  1:5270578‑M2/37‑48 (MQ=255)

             attcccagcctcctgtgttgatttctaacgagtatAACTTTGATTTATAg                                    >  1:934132‑M2/36‑50 (MQ=255)

             attcccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAg                                    <  1:3083234‑M2/15‑1 (MQ=255)

             attcccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAg                                    <  1:4888646‑M2/15‑1 (MQ=255)

             attcccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAg                                    <  1:1295927‑M2/15‑1 (MQ=255)

             attcccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAg                                    >  1:5208746‑M2/36‑50 (MQ=255)

             attcccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAg                                    >  1:4499487‑M2/36‑50 (MQ=255)

             attcccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAg                                    <  1:3217589‑M2/15‑1 (MQ=255)

             attcccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAg                                    >  1:1122069‑M2/36‑50 (MQ=255)

             attcccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAg                                    <  1:3274136‑M2/15‑1 (MQ=255)

              ttcccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGt                                   <  1:4054370‑M2/16‑1 (MQ=255)

              ttcccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGt                                   >  1:1972507‑M2/35‑50 (MQ=255)

              ttcccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGt                                   <  1:1459732‑M2/16‑1 (MQ=255)

                cccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGt                                   >  1:1219661‑M2/33‑48 (MQ=255)

                cccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGt                                   >  1:52177‑M2/33‑48 (MQ=255)

                cccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGt                                   >  1:5679114‑M2/33‑48 (MQ=255)

                cccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGt                                   >  1:7504157‑M2/33‑48 (MQ=255)

                cccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTc                                  <  1:7789087‑M2/17‑1 (MQ=255)

                cccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTc                                  <  1:3494842‑M2/17‑1 (MQ=255)

                 ccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCa                                 <  1:1495070‑M2/18‑1 (MQ=255)

                 ccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCa                                 <  1:6875474‑M2/18‑1 (MQ=255)

                 ccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAg                                >  1:5223340‑M2/32‑50 (MQ=255)

                  cagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAgg                               >  1:7143743‑M2/31‑50 (MQ=255)

                   agcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGt                              <  1:3518200‑M2/21‑1 (MQ=255)

                    gcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTg                             <  1:7337197‑M2/22‑1 (MQ=255)

                    gcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTg                             <  1:2741280‑M2/22‑1 (MQ=255)

                    gcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTg                             <  1:4615467‑M2/22‑1 (MQ=255)

                     cctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTgg                            >  1:5700450‑M2/28‑50 (MQ=255)

                     cctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTgg                            <  1:1114814‑M2/23‑1 (MQ=255)

                      ctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTggg                           <  1:6994746‑M2/24‑1 (MQ=255)

                       tcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTgggg                          >  1:7694788‑M2/26‑50 (MQ=255)

                       tcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTgggg                          >  1:7134080‑M2/26‑50 (MQ=255)

                         ctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGc                         <  1:8032384‑M2/26‑1 (MQ=255)

                         ctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCt                        <  1:7303425‑M2/27‑1 (MQ=255)

                         ctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCt                        >  1:396794‑M2/24‑50 (MQ=255)

                         ctgtgttgattcccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCt                        >  1:6832926‑M2/24‑50 (MQ=255)

                          tgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCtt                       >  1:1228388‑M2/23‑50 (MQ=255)

                            tgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCttt                      <  1:6075801‑M2/29‑1 (MQ=255)

                            tgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCttt                      <  1:4011908‑M2/29‑1 (MQ=255)

                            tgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCtt                       <  1:5096041‑M2/28‑1 (MQ=255)

                              ttgatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTtct                   <  1:8520567‑M2/32‑1 (MQ=255)

                                gatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTctct                 >  1:156948‑M2/17‑50 (MQ=255)

                                gatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTctct                 >  1:518649‑M2/17‑50 (MQ=255)

                                 atttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTctct                 <  1:6890757‑M2/34‑1 (MQ=255)

                                    tccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtc              <  1:832674‑M2/37‑1 (MQ=255)

                                     ccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtctg            >  1:5948159‑M2/12‑50 (MQ=255)

                                     ccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtct             <  1:4348705‑M2/38‑1 (MQ=255)

                                     ccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtct             <  1:6146891‑M2/38‑1 (MQ=255)

                                     ccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCATTTCtctgtct             <  1:1702519‑M2/38‑1 (MQ=255)

                                      caacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtctg            <  1:4180519‑M2/39‑1 (MQ=255)

                                      caacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGc           <  1:3895453‑M2/40‑1 (MQ=255)

                                        acgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCt         <  1:7300788‑M2/42‑1 (MQ=255)

                                        acgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCt         >  1:2222448‑M2/9‑50 (MQ=255)

                                        acgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCt         <  1:2780072‑M2/42‑1 (MQ=255)

                                         cgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCtt        <  1:5561708‑M2/43‑1 (MQ=255)

                                          gagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCttt       <  1:1073935‑M2/44‑1 (MQ=255)

                                            gtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCg     >  1:7136430‑M2/5‑50 (MQ=255)

                                             tatAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCgg    <  1:5212346‑M2/47‑1 (MQ=255)

                                             tatAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCgg    >  1:4407406‑M2/4‑50 (MQ=255)

                                              atAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGTCTTTCGGt   >  1:961822‑M2/3‑50 (MQ=255)

                                              atAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGt   >  1:839301‑M2/3‑50 (MQ=255)

                                              atAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGt   >  1:2638819‑M2/3‑50 (MQ=255)

                                               tAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGt   <  1:1731413‑M2/48‑1 (MQ=255)

                                                aaCTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTg  >  1:1112766/1‑49 (MQ=255)

GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTG  >  NC_000913/3722028‑3722124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`