| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,628 | Δ25,538 bp | [mdtP]–[phnC] | 27 genes [mdtP], mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, [phnC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299628 | 4325165 | 25538 | 97 [0] | [0] 90 | [mdtP]–[phnC] | [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 0 (0.000) | 88 (0.770) | 57/98 | 0.0 | 100% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 0 (0.000) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
CGACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGG > NC_000913/4299578‑4299676 | cgacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg < 1:8265816/50‑1 (MQ=255)cgacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg < 1:7806193/50‑1 (MQ=255)cgacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 1:6906022/1‑50 (MQ=255)cgacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 1:6870329/1‑50 (MQ=255)cgacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg < 1:6123358/50‑1 (MQ=255) gacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 1:2984301/1‑49 (MQ=255) gacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 1:4228748/1‑49 (MQ=255) gacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 1:2425468/1‑49 (MQ=255) gacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 1:4793103/1‑49 (MQ=255) cGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgat > 1:5206388‑M1/1‑47 (MQ=255) cGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgat < 1:4972689‑M1/50‑4 (MQ=255) cGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgat < 1:5355726‑M1/50‑4 (MQ=255) cGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgat < 1:7274003‑M1/50‑4 (MQ=255) cGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgat < 1:335734‑M1/50‑4 (MQ=255) tggaCCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:5272392‑M1/2‑46 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg < 1:4722441‑M1/50‑5 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg < 1:6941357‑M1/50‑5 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:958884‑M1/1‑46 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:1699092‑M1/1‑46 (MQ=255) gACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgca < 1:4238178‑M1/50‑7 (MQ=255) gACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:26018‑M1/1‑44 (MQ=255) aCCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcag < 1:6209291‑M1/50‑8 (MQ=255) aCCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcag > 1:2029733‑M1/1‑43 (MQ=255) aCCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcag > 1:3751760‑M1/1‑43 (MQ=255) cctgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagc < 1:3085588‑M1/50‑9 (MQ=255) ctgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcc < 1:6660078‑M1/50‑10 (MQ=255) ctgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcc < 1:8333786‑M1/50‑10 (MQ=255) tgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcct > 1:7753509‑M1/1‑40 (MQ=255) tgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcct > 1:7635255‑M1/1‑40 (MQ=255) gcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctc > 1:2612064‑M1/1‑39 (MQ=255) gcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctc > 1:4096470‑M1/1‑39 (MQ=255) cctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctcc > 1:1535080‑M1/1‑38 (MQ=255) cctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctcc < 1:4107534‑M1/50‑13 (MQ=255) cctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctcc > 1:917186‑M1/1‑38 (MQ=255) cctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcct < 1:5323668‑M1/48‑11 (MQ=255) ctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccc > 1:3616214‑M1/1‑37 (MQ=255) tgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccc > 1:2353245‑M1/1‑36 (MQ=255) gATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccct > 1:6743030‑M1/1‑35 (MQ=255) aTACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctcccta < 1:8211700‑M1/49‑16 (MQ=255) aTACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctcccta < 1:1725988‑M1/49‑16 (MQ=255) tACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaa > 1:6355830‑M1/1‑33 (MQ=255) aCCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaa > 1:7778433‑M1/1‑32 (MQ=255) aCCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaa > 1:1841860‑M1/1‑32 (MQ=255) cccGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaa < 1:6458479‑M1/49‑19 (MQ=255) cccGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaa < 1:3620890‑M1/49‑19 (MQ=255) ccgccgCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaa > 1:2496308‑M1/1‑30 (MQ=255) gccgccCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagt < 1:4722240‑M1/50‑23 (MQ=255) ccgccCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtg > 1:808957‑M1/1‑27 (MQ=255) gccCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggc < 1:3444525‑M1/50‑26 (MQ=255) cccAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggct < 1:5798997‑M1/50‑27 (MQ=255) cccAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggct < 1:1799647‑M1/50‑27 (MQ=255) cccAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggct > 1:8252586‑M1/1‑24 (MQ=255) ccAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctc > 1:4452476‑M1/1‑23 (MQ=255) cAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctcc < 1:1234961‑M1/50‑29 (MQ=255) aGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctcca < 1:2351574‑M1/50‑30 (MQ=255) aGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctcca > 1:8193340‑M1/1‑21 (MQ=255) gCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccat < 1:3464173‑M1/50‑31 (MQ=255) cGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatc < 1:1537519‑M1/50‑32 (MQ=255) cGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatc > 1:6916506‑M1/1‑19 (MQ=255) cGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatc > 1:2747563‑M1/1‑19 (MQ=255) cGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatc < 1:2763056‑M1/50‑32 (MQ=255) cGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatc < 1:7616754‑M1/50‑32 (MQ=255) cGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatc < 1:5161068‑M1/50‑32 (MQ=255) cGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatc < 1:4515738‑M1/50‑32 (MQ=255) gATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcg > 1:6254331‑M1/1‑18 (MQ=255) gATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcg < 1:4249604‑M1/50‑33 (MQ=255) aTTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgt < 1:2904724‑M1/50‑34 (MQ=255) aTTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgt > 1:6935464‑M1/1‑17 (MQ=255) tttCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgtg < 1:6086898‑M1/50‑35 (MQ=255) tttCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgtg < 1:390958‑M1/50‑35 (MQ=255) tttCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgtg < 1:7024752‑M1/50‑35 (MQ=255) ttCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgtgg > 1:2139351‑M1/1‑15 (MQ=255) tcatcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtgg < 1:5432666‑M1/49‑36 (MQ=255) tcatcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtgg < 1:4360132‑M1/49‑36 (MQ=255) tcatcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtgg < 1:7526678‑M1/49‑36 (MQ=255) catcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcg > 1:3978167‑M1/1‑13 (MQ=255) catcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcg > 1:6723813‑M1/1‑13 (MQ=255) catcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggc < 1:8177281‑M1/49‑37 (MQ=255) catcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggc < 1:8216055‑M1/49‑37 (MQ=255) atcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcgg < 1:8503572‑M1/50‑39 (MQ=255) atcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcg < 1:2358890‑M1/49‑38 (MQ=255) aaCTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggatt < 1:6529555‑M1/50‑42 (MQ=255) aaCTGAATGgatgcagcctccctaaaaaagaggctccatcgtggcggat > 1:1152736‑M1/1‑9 (MQ=255) aCTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggatta < 1:7954045‑M1/50‑43 (MQ=255) aCTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggatta < 1:6484914‑M1/50‑43 (MQ=255) cTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggattat < 1:6214985‑M1/50‑44 (MQ=255) cTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggattat < 1:3281629‑M1/50‑44 (MQ=255) tGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggattatt > 1:1661658‑M1/1‑6 (MQ=255) tGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggattatt > 1:3211727‑M1/1‑6 (MQ=255) gAATGgatgcagcctccctaaaaaagtggctccatcgtggcggattattg > 1:7804555‑M1/1‑5 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgt < 1:3371098‑M1/50‑47 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattg < 1:6463130‑M1/49‑46 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattatt < 1:6643445‑M1/48‑45 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattatt < 1:8212848‑M1/48‑45 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattatt < 1:2749079‑M1/48‑45 (MQ=255) tGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgtga < 1:5269021‑M1/50‑49 (MQ=255) ggatgcagcctccctaaaaaagtggctccatcgtggcggattattgtgac > 1:8301666‑M1/1‑1 (MQ=255) | CGACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGG > NC_000913/4299578‑4299676 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |