| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,628 | Δ25,538 bp | [mdtP]–[phnC] | 27 genes [mdtP], mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, [phnC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299628 | 4325165 | 25538 | 97 [0] | [0] 90 | [mdtP]–[phnC] | [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 0 (0.000) | 88 (0.770) | 57/98 | 0.0 | 100% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 0 (0.000) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
TGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCGTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAC > NC_000913/4325119‑4325214 | cgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGAt < 1:7274003‑M2/3‑1 (MQ=255)cgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGAt < 1:5355726‑M2/3‑1 (MQ=255)cgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGAt > 1:5206388‑M2/48‑50 (MQ=255)cgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGAt < 1:4972689‑M2/3‑1 (MQ=255)cgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGAt < 1:335734‑M2/3‑1 (MQ=255) tggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg > 1:5272392‑M2/47‑50 (MQ=255) gggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg > 1:958884‑M2/47‑50 (MQ=255) gggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg < 1:6941357‑M2/4‑1 (MQ=255) gggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg < 1:4722441‑M2/4‑1 (MQ=255) gggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg > 1:1699092‑M2/47‑50 (MQ=255) gacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg > 1:26018‑M2/45‑48 (MQ=255) gacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCa < 1:4238178‑M2/6‑1 (MQ=255) acctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAg > 1:2029733‑M2/44‑50 (MQ=255) acctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAg > 1:3751760‑M2/44‑50 (MQ=255) acctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAg < 1:6209291‑M2/7‑1 (MQ=255) cctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGc < 1:3085588‑M2/8‑1 (MQ=255) ctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGcc < 1:6660078‑M2/9‑1 (MQ=255) ctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGcc < 1:8333786‑M2/9‑1 (MQ=255) tgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCt > 1:7635255‑M2/41‑50 (MQ=255) tgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCt > 1:7753509‑M2/41‑50 (MQ=255) gcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTc > 1:2612064‑M2/40‑50 (MQ=255) gcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTc > 1:4096470‑M2/40‑50 (MQ=255) cctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCt < 1:5323668‑M2/10‑1 (MQ=255) cctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTcc > 1:917186‑M2/39‑50 (MQ=255) cctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTcc < 1:4107534‑M2/12‑1 (MQ=255) cctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTcc > 1:1535080‑M2/39‑50 (MQ=255) ctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTccc > 1:3616214‑M2/38‑50 (MQ=255) tgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTccc > 1:2353245‑M2/37‑49 (MQ=255) gatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCt > 1:6743030‑M2/36‑49 (MQ=255) atacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTa < 1:8211700‑M2/15‑1 (MQ=255) atacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTa < 1:1725988‑M2/15‑1 (MQ=255) tacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaa > 1:6355830‑M2/34‑49 (MQ=255) acccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaaa > 1:7778433‑M2/33‑49 (MQ=255) acccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaaa > 1:1841860‑M2/33‑49 (MQ=255) cccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaaaa < 1:3620890‑M2/18‑1 (MQ=255) cccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaaaa < 1:6458479‑M2/18‑1 (MQ=255) ccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaaaa > 1:2496308‑M2/31‑48 (MQ=255) gccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGt < 1:4722240‑M2/22‑1 (MQ=255) ccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTg > 1:808957‑M2/28‑50 (MQ=255) gcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGc < 1:3444525‑M2/25‑1 (MQ=255) cccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCt < 1:1799647‑M2/26‑1 (MQ=255) cccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCt < 1:5798997‑M2/26‑1 (MQ=255) cccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCt > 1:8252586‑M2/25‑50 (MQ=255) ccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTc > 1:4452476‑M2/24‑50 (MQ=255) cagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTcc < 1:1234961‑M2/28‑1 (MQ=255) agcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCa < 1:2351574‑M2/29‑1 (MQ=255) agcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCa > 1:8193340‑M2/22‑50 (MQ=255) gcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCAt < 1:3464173‑M2/30‑1 (MQ=255) cgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATc < 1:1537519‑M2/31‑1 (MQ=255) cgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATc < 1:5161068‑M2/31‑1 (MQ=255) cgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATc > 1:6916506‑M2/20‑50 (MQ=255) cgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATc < 1:2763056‑M2/31‑1 (MQ=255) cgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATc < 1:4515738‑M2/31‑1 (MQ=255) cgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATc > 1:2747563‑M2/20‑50 (MQ=255) cgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATc < 1:7616754‑M2/31‑1 (MQ=255) gatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCg < 1:4249604‑M2/32‑1 (MQ=255) gatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCg > 1:6254331‑M2/19‑50 (MQ=255) atttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGt < 1:2904724‑M2/33‑1 (MQ=255) atttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGt > 1:6935464‑M2/18‑50 (MQ=255) tttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTg < 1:390958‑M2/34‑1 (MQ=255) tttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTg < 1:7024752‑M2/34‑1 (MQ=255) tttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTg < 1:6086898‑M2/34‑1 (MQ=255) ttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTgg > 1:2139351‑M2/16‑50 (MQ=255) tcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTgg < 1:4360132‑M2/35‑1 (MQ=255) tcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTgg < 1:7526678‑M2/35‑1 (MQ=255) tcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTgg < 1:5432666‑M2/35‑1 (MQ=255) catcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGc < 1:8177281‑M2/36‑1 (MQ=255) catcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGc < 1:8216055‑M2/36‑1 (MQ=255) catcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCg > 1:3978167‑M2/14‑50 (MQ=255) catcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCg > 1:6723813‑M2/14‑50 (MQ=255) atcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCgg < 1:8503572‑M2/38‑1 (MQ=255) atcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCg < 1:2358890‑M2/37‑1 (MQ=255) aactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGatt < 1:6529555‑M2/41‑1 (MQ=255) aactgaatgGATGCAGCCTCCCTAAAAAAGAGGCTCCATCGTGGCGGat > 1:1152736‑M2/10‑49 (MQ=255) actgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGatta < 1:6484914‑M2/42‑1 (MQ=255) actgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGatta < 1:7954045‑M2/42‑1 (MQ=255) ctgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattat < 1:3281629‑M2/43‑1 (MQ=255) ctgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattat < 1:6214985‑M2/43‑1 (MQ=255) tgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattatt > 1:3211727‑M2/7‑50 (MQ=255) tgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattatt > 1:1661658‑M2/7‑50 (MQ=255) gaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtg > 1:7804555‑M2/6‑50 (MQ=255) aatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattatt < 1:8212848‑M2/44‑1 (MQ=255) aatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattatt < 1:2749079‑M2/44‑1 (MQ=255) aatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattatt < 1:6643445‑M2/44‑1 (MQ=255) aatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtgt < 1:3371098‑M2/46‑1 (MQ=255) aatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtg < 1:6463130‑M2/45‑1 (MQ=255) tgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGa < 1:5269021‑M2/48‑1 (MQ=255) gGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAc > 1:8301666‑M2/2‑50 (MQ=255) gatgCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAc > 1:5779267/1‑49 (MQ=255) gatgCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAc > 1:1140452/1‑49 (MQ=255) | TGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCGTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAC > NC_000913/4325119‑4325214 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |