New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	8 (0.090)	7/82	9.8	100%	intergenic (‑305/+16)	flhD/insB‑5	DNA‑binding transcriptional dual regulator FlhD/IS1 protein InsB
	?	NC_000913	1979279 =	0 (0.000)					intergenic (‑64/‑474)	insA‑5/uspC	IS1 protein InsA/universal stress protein C
Rejected: Coverage evenness skew score above cutoff.

TTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1978447‑1978502 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTC  >  NC_000913/1979279‑1979310                                                                                          TTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACA                                        >  1:2780175/1‑50        TAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG                                  >  2:3672257/1‑49                  TGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATA                       <  1:2627995/50‑1                       ATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTT                  <  2:129455/50‑1                          ACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGT                <  2:1664138/49‑1                                 ACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTG        >  1:5069432/1‑50                                  CACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTG        >  2:1188993/1‑49                                     TCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATT    >  1:3915712/1‑50                                     TCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATT    >  2:2397338/1‑50                                       AATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTC  <  1:2093104/50‑1                                                                                          TTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1978447‑1978502 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTC  >  NC_000913/1979279‑1979310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.