| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 2,798,370 | (TTC)4→3 | coding (124‑126/405 nt) | stpA ← | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2798364 = | 19 (0.170) | 84 (0.940) | 47/80 | 0.1 | 83.4% | coding (132/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| ? | NC_000913 | = 2798360 | 18 (0.200) | coding (136/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity | |||||
Only 100 of 141 total aligned reads displayed.
CTTGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2798420‑2798364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagaagaaCAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGGC < NC_000913/2798360‑2798312 CTTGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTG > 2:254130/1‑49CTTGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTG < 1:3446467/49‑1 TGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTG > 1:4754791/1‑47 TGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTG > 2:3302004/1‑47 GAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG > 1:3562519/1‑49 GAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAA < 2:1736805/48‑1 AAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAA < 1:1421398/50‑1 AAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG > 2:5331335/1‑48 AGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAG < 2:618095/50‑1 AGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAG < 1:2118106/50‑1 AGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAG < 2:3604050/50‑1 AGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAG < 2:4366522/50‑1 AGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG > 1:4733341/1‑47 AGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG > 1:245721/1‑47 AGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG > 1:4476081/1‑47 GAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGA < 2:3082280/50‑1 GAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGA < 2:4720023/50‑1 GAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGA < 2:5041036/50‑1 GAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAG > 2:4281314/1‑49 AAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA > 1:2971568/1‑50 AAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA < 2:205099/50‑1 AAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA < 1:2345975/50‑1 AATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAAC < 2:4472552/50‑1 AATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAAC < 2:3312260/50‑1 ATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACA < 2:4801698/50‑1 GCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAG > 1:5386111/1‑49 GCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAG > 2:4744949/1‑49 CTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGC < 2:5260965/49‑1 TCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAG > 1:2103040/1‑50 GAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCA < 1:2598877/50‑1 GAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCA < 2:1374241/50‑1 GAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAG > 2:1793957/1‑48 GAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAG > 1:639309/1‑48 AAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAG > 2:2704567/1‑50 AAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGC > 2:333929/1‑50 AAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGC < 1:1518535/50‑1 AAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCG < 2:1995274/50‑1 AATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGT < 2:2976223/50‑1 AATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGT < 2:2446906/50‑1 ATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGT > 1:4272279/1‑49 CAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAA < 2:2519592/49‑1 CAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAA < 2:837558/49‑1 AGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACT > 1:1176968/1‑50 AGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACT > 2:4118548/1‑50 GGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTG > 2:74211/1‑50 GGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGG < 2:4644468/50‑1 GTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGG > 1:2529372/1‑49 TCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAG > 2:1691169/1‑50 TCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAG < 1:4672734/50‑1 TCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAG < 1:3600889/50‑1 TCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAG < 1:4329508/50‑1 TCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGA < 2:3728420/49‑1 CACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGC > 1:4995035/1‑50 ACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCG > 1:4214625/1‑50 CTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGC < 1:571389/50‑1 CTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGC > 2:808746/1‑50 CTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGC > 2:3968585/1‑50 CTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGC > 1:331520/1‑50 AAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGC > 1:1855685/1‑48 AAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAG > 2:1112820/1‑50 AAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCC < 2:2330392/48‑1 AAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCC < 2:311260/48‑1 AGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGG < 1:4340643/50‑1 AGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGG < 1:4214355/50‑1 AGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAG > 2:162199/1‑49 GAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGTCAGGA < 1:3177698/50‑1 GAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGA < 1:1564549/50‑1 GAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGG > 2:2662855/1‑49 AAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGA > 2:3672056/1‑49 AAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAA < 1:4652958/50‑1 AAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAA > 2:4873260/1‑49 AAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAA > 2:3522869/1‑49 AGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAA > 1:3558839/1‑49 ACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAA < 1:311781/50‑1 GTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAAT > 1:436564/1‑49 GTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAAT > 2:2149395/1‑49 GAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAG > 1:175093/1‑50 AAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGC < 1:2525208/50‑1 AAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAG > 1:3975025/1‑49 AGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCA > 1:5063049/1‑50 AGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCA > 1:883622/1‑50 AGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCA > 1:3658106/1‑50 AGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCA < 2:3500636/50‑1 GAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCAC < 2:2490643/50‑1 GAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCAC < 1:3927335/50‑1 GAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCAC < 1:450052/50‑1 AAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACC > 2:1423249/1‑50 AAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACC < 2:5142092/50‑1 AAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACC > 2:2542137/1‑50 AGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCT > 2:1370989/1‑50 AGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCT > 2:4528984/1‑50 GAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTG > 1:4797005/1‑50 GAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTG > 2:662206/1‑50 GAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTG > 1:3262823/1‑50 GAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTG < 2:2795835/50‑1 AACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGG < 2:4861420/50‑1 AACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGG < 1:1662083/50‑1 AACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGG < 2:2333688/50‑1 AACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGG > 2:2845252/1‑50 ACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGGC < 1:1476772/50‑1 CTTGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2798420‑2798364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagaagaaCAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGGC < NC_000913/2798360‑2798312 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |