| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 2,798,370 | (TTC)4→3 | coding (124‑126/405 nt) | stpA ← | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2798364 = | 19 (0.170) | 84 (0.940) | 47/80 | 0.1 | 83.4% | coding (132/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| ? | NC_000913 | = 2798360 | 18 (0.200) | coding (136/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity | |||||
Only 100 of 132 total aligned reads displayed.
AGCCAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGC > NC_000913/2798311‑2798409 | agccagGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGctgctgctg > 1:2227497/1‑50 (MQ=255) gCCAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGt < 1:1476772‑M2/50‑2 (MQ=255) gCCAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGt < 1:4062090‑M2/50‑2 (MQ=255) gCCAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGt < 2:3586611‑M2/50‑2 (MQ=255) ccAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGtt > 2:2845252‑M2/1‑48 (MQ=255) ccAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGtt < 2:2333688‑M2/50‑3 (MQ=255) cAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttc > 1:3262823‑M2/1‑47 (MQ=255) cAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttc > 1:4797005‑M2/1‑47 (MQ=255) cAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttc > 2:662206‑M2/1‑47 (MQ=255) aGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttct > 2:1370989‑M2/1‑46 (MQ=255) aGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttct > 2:4528984‑M2/1‑46 (MQ=255) ggTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttctt > 2:2542137‑M2/1‑45 (MQ=255) ggTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttctt < 2:5142092‑M2/50‑6 (MQ=255) ggTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttctt > 2:1423249‑M2/1‑45 (MQ=255) gTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttc < 1:450052‑M2/50‑7 (MQ=255) gTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttc < 2:2490643‑M2/50‑7 (MQ=255) gTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttc < 1:3927335‑M2/50‑7 (MQ=255) tGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttct > 1:5063049‑M2/1‑43 (MQ=255) tGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttct > 1:883622‑M2/1‑43 (MQ=255) tGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttct < 2:3500636‑M2/50‑8 (MQ=255) cTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttc > 1:175093‑M2/1‑41 (MQ=255) cTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttctt > 1:3975025‑M2/1‑41 (MQ=255) aTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcac > 2:2149395‑M2/1‑38 (MQ=255) ttttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgt < 1:311781‑M2/50‑14 (MQ=255) tttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtc < 1:3199317‑M2/50‑15 (MQ=255) ttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCAc < 1:1800237/49‑1 (MQ=255) tttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctt < 1:4652958‑M2/50‑17 (MQ=255) tttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtct > 1:3558839‑M2/1‑34 (MQ=255) ttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctt > 2:4873260‑M2/1‑33 (MQ=255) ttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtc > 1:255186/1‑50 (MQ=255) tCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttc < 1:1564549‑M2/50‑19 (MQ=255) tCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtcttt > 2:3672056‑M2/1‑32 (MQ=255) ccTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttct < 1:4340643‑M2/50‑20 (MQ=255) ccTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttct < 2:1286996‑M2/50‑20 (MQ=255) ccTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttct < 2:2710276‑M2/50‑20 (MQ=255) ccTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttc > 2:2662855‑M2/1‑31 (MQ=255) cTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctt > 2:1112820‑M2/1‑30 (MQ=255) cTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctt < 1:622910‑M2/50‑21 (MQ=255) cTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctt > 1:4692790‑M2/1‑30 (MQ=255) cTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttct > 2:162199‑M2/1‑30 (MQ=255) cTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtctt < 1:4744995/49‑1 (MQ=255) tGGTGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtctttc > 2:2546897/1‑50 (MQ=255) tGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctt < 2:4774734‑M2/49‑21 (MQ=255) tGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctt < 1:435295‑M2/49‑21 (MQ=255) tGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtctttc > 1:1152024/1‑50 (MQ=255) ggCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctt < 2:311260‑M2/48‑21 (MQ=255) ggCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctt < 2:2330392‑M2/48‑21 (MQ=255) gcgcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttag > 1:331520‑M2/1‑27 (MQ=255) gcgcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttag < 1:2528670‑M2/50‑24 (MQ=255) gcgcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttag > 2:3968585‑M2/1‑27 (MQ=255) gcgcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttag < 1:571389‑M2/50‑24 (MQ=255) gcgcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttcttt > 1:1855685‑M2/1‑27 (MQ=255) gcgcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttcttt > 2:2503978‑M2/1‑27 (MQ=255) cgcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagt > 1:4214625‑M2/1‑26 (MQ=255) gcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtg > 1:1604541‑M2/1‑25 (MQ=255) gcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtg > 1:3884574‑M2/1‑25 (MQ=255) gcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtg > 1:4995035‑M2/1‑25 (MQ=255) gcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagt < 2:4465242‑M2/49‑25 (MQ=255) ctctGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtga < 1:4329508‑M2/50‑27 (MQ=255) ctctGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtga > 1:2872724‑M2/1‑24 (MQ=255) ctctGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtga > 2:1691169‑M2/1‑24 (MQ=255) ctctGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtga < 1:3600889‑M2/50‑27 (MQ=255) ctctGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAg < 1:921291/50‑1 (MQ=255) tctGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtga < 2:3728420‑M2/49‑27 (MQ=255) tGCCAGTTCACGCTGCTGCTGTTCTTCTTCCTCACGTCTTTCTTTAGTGa > 1:1623521/1‑50 (MQ=255) gCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaac < 1:2221652‑M2/50‑31 (MQ=255) ccAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaac > 1:2529372‑M2/1‑19 (MQ=255) ccAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaac > 1:1479177‑M2/1‑19 (MQ=255) ccAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgaca > 2:3481047‑M2/1‑19 (MQ=255) cAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccc > 2:74211‑M2/1‑18 (MQ=255) aGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacagccct > 2:4958769‑M2/1‑17 (MQ=255) aGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccct > 1:1176968‑M2/1‑17 (MQ=255) ttCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctg < 2:837558‑M2/49‑35 (MQ=255) cACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCt > 2:809168/1‑49 (MQ=255) aCGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaatt < 2:2976223‑M2/50‑39 (MQ=255) aCGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaatt < 2:2446906‑M2/50‑39 (MQ=255) aCGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaatt > 2:1857293‑M2/1‑12 (MQ=255) aCGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaat > 1:4272279‑M2/1‑12 (MQ=255) aCGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaat > 1:4535741‑M2/1‑12 (MQ=255) cGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaattt < 2:1995274‑M2/50‑40 (MQ=255) cGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGaa < 2:2604600/50‑1 (MQ=255) cGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGaa < 2:1334507/50‑1 (MQ=255) gctgctgctGttcttcttcacgtctttctttagtgacaaccctgaatttt > 2:333929‑M2/1‑10 (MQ=255) gctgctgctGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAt > 2:4057568/1‑50 (MQ=255) gctgctgctGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAt < 1:308169/50‑1 (MQ=255) ctgctgctgttcttcttcacgtctttctttagtgacaaccctgaattttt > 2:2704567‑M2/1‑9 (MQ=255) tgctgctgttcttcttcacgtctttctttagtgacaaccctgaatttttc < 2:1374241‑M2/50‑43 (MQ=255) ctgctgttcttcttcacgtctttctttagtgacaaccctgaatttttcga > 1:2103040‑M2/1‑6 (MQ=255) ctgctgttcttcttcacgtctttctttagtgacaaccctgaatttttc < 2:387507‑M2/48‑43 (MQ=255) ctgctgttcttcttcacgtctttctttagtgacaaccctgaatttttc > 2:1793957‑M2/1‑6 (MQ=255) ctgctgttcttcttcacgtctttctttagtgacaaccctgaatttttc > 1:356070‑M2/1‑6 (MQ=255) gctgttcttcttcacgtctttctttagtgacaaccctgaatttttcgag < 2:5260965‑M2/49‑46 (MQ=255) ctgttcttcttcacgtctttctttagtgacaaccctgaatttttcgagc > 1:5386111‑M2/1‑3 (MQ=255) ctgttcttcttcacgtctttctttagtgacaaccctgaatttttcgagc > 2:4744949‑M2/1‑3 (MQ=255) ctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCg < 1:5216194/49‑1 (MQ=255) tgttcttcttcacgtctttctttagtgacaaccctgaatttttcgagcat < 2:4801698‑M2/50‑49 (MQ=255) gttcttcttcacgtctttctttagtgacaaccctgaatttttcgagcatt < 2:968712‑M2/50‑50 (MQ=255) gttcttcttcacgtctttctttagtgacaaccctgaatttttcgagcatt < 2:4472552‑M2/50‑50 (MQ=255) gttcttcttcacgtctttctttagtgacaaccctgaatttttcgagcatt < 2:3312260‑M2/50‑50 (MQ=255) gTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAg > 1:4275634/1‑49 (MQ=255) | AGCCAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGC > NC_000913/2798311‑2798409 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |