| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3593298 | 107 (0.980) | 25 (0.230) | 23/98 | 4.7 | 19.2% | coding (140/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF |
| ? | NC_000913 | 3593309 = | 104 (0.950) | coding (129/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3593250‑3593298‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGAT > NC_000913/3593309‑3593352 ACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAC > 1:5183957/1‑50 CAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACC > 1:2053590/1‑50 ATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCC > 1:3584939/1‑50 ATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCC < 1:4608784/50‑1 TTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCG > 2:4758286/1‑50 TCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGC > 2:4476450/1‑50 CGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGC < 1:1977552/49‑1 CCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCG > 2:4073166/1‑50 CGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGT > 2:4936833/1‑50 GCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTT > 1:3590456/1‑50 CTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTC < 2:3421652/50‑1 CTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTC < 2:2982832/50‑1 TGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCG > 2:1307695/1‑50 GCACGCGGATCGCCGCATAACGTGCCGAGCCCCCCGCCCCGTTCGCGCCA < 2:2641752/50‑1 ACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAAT > 2:2319618/1‑50 ATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGT > 1:3809864/1‑50 ATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGT < 1:1124688/50‑1 GCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGA > 1:7476/1‑49 CGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAA > 1:1022717/1‑50 CGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAA > 2:3663746/1‑50 ATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCT > 1:1426386/1‑50 CGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCC > 2:3539647/1‑50 GTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCC > 2:1748672/1‑50 TGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCT > 2:4139928/1‑50 CGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGAT < 1:925742/50‑1 ACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3593250‑3593298‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGAT > NC_000913/3593309‑3593352 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |