| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3593298 | 107 (0.980) | 25 (0.230) | 23/98 | 4.7 | 19.2% | coding (140/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF |
| ? | NC_000913 | 3593309 = | 104 (0.950) | coding (129/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 109 total aligned reads displayed.
ACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCC > NC_000913/3593250‑3593347 | acaATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCac > 1:5183957/1‑49 (MQ=255) caATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCacc > 1:2053590/1‑48 (MQ=255) aaTTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAgg < 1:4291291/50‑1 (MQ=255) aTTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAggt > 2:4528555/1‑50 (MQ=255) aTTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAggt < 2:3195564/50‑1 (MQ=255) aTTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAggt > 2:1576241/1‑50 (MQ=255) aTTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAggt < 1:3521690/50‑1 (MQ=255) tCGCCCGCTGCTGGCACGCGGATCGCCGCCTAACGTGCCGAGCAAggcgg > 1:995884/1‑50 (MQ=255) cGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAggtgg < 1:1020485/49‑1 (MQ=255) cGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAggtgg < 1:1402639/49‑1 (MQ=255) gCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGtt > 1:2705411/1‑50 (MQ=255) gCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGtt > 2:5333138/1‑50 (MQ=255) gCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGtt > 1:5051589/1‑50 (MQ=255) gCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGtt < 1:737089/50‑1 (MQ=255) gCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGtt < 1:793842/50‑1 (MQ=255) gCCCGCTGGTGGCACGAGGATCGCCGCATAACGTGCCGAGCAAggtggt < 2:333106/49‑1 (MQ=255) cccGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGttt > 2:4620785/1‑50 (MQ=255) ccGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGtttt > 1:1241776/1‑50 (MQ=255) cGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTc > 2:5215997/1‑50 (MQ=255) cGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTc > 2:234880/1‑50 (MQ=255) cGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTc > 2:1422071/1‑50 (MQ=255) cGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTc > 2:1404911/1‑50 (MQ=255) cGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTc > 1:120426/1‑50 (MQ=255) cGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGCGGTTTTc > 2:143515/1‑50 (MQ=255) gCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTcc > 1:4955545/1‑50 (MQ=255) gCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTcc < 2:272066/50‑1 (MQ=255) gCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTcc > 1:781823/1‑50 (MQ=255) cTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTccc > 2:272406/1‑50 (MQ=255) cTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTccc < 1:2074298/50‑1 (MQ=255) cTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTccc < 1:4140679/50‑1 (MQ=255) tggtggCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTcccc > 1:335490/1‑50 (MQ=255) tggtggCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTcccc > 1:4550430/1‑50 (MQ=255) tggtggCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTcccc > 2:2525641/1‑50 (MQ=255) tggtggCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTcccc > 1:2124074/1‑50 (MQ=255) ggtggCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTccccg > 1:1933239/1‑50 (MQ=255) gtggCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTccccg < 1:3810285/49‑1 (MQ=255) gtggCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTccccg < 1:2076555/49‑1 (MQ=255) tggCACGCAGATCGCCGCATAACGTGCCGAGCAAGTTGGTTTTccccgcc < 1:4819537/50‑1 (MQ=255) gCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTccccgccc < 1:4123633/49‑1 (MQ=255) gCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTccccgccc < 2:3245298/49‑1 (MQ=255) gCACGCGGACCGCCGCATAACGTGCCGAGCAAGGTGGTTTTccccgcccc < 2:882310/50‑1 (MQ=255) ccACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTccccgcccc < 1:4490705/49‑1 (MQ=255) cACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTccccgccccg > 2:3663115/1‑50 (MQ=255) cACGCGGATCCCCGCATAACGTGCCGTGCAAGGTGTTTTTccccgccccg < 2:3919688/50‑1 (MQ=255) aCGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGt < 2:4679741/50‑1 (MQ=255) aCGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGt > 1:138055/1‑50 (MQ=255) aCGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGt > 1:802678/1‑50 (MQ=255) gcgGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTc < 1:4891377/50‑1 (MQ=255) gcgGATCGCCGCATAACGGGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTc < 2:418438/50‑1 (MQ=255) gcgGAGCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTc < 1:2888602/50‑1 (MQ=255) cgGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTcg > 2:4299964/1‑50 (MQ=255) cgGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTcg < 1:3935811/50‑1 (MQ=255) ggATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTcgc < 1:704373/50‑1 (MQ=255) ggATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTcgc > 2:3798678/1‑50 (MQ=255) ggATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTcgc > 2:543375/1‑50 (MQ=255) ggATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTcgc > 2:5119517/1‑50 (MQ=255) gATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTcgcg < 1:2328546/50‑1 (MQ=255) aTCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCgcgc > 1:5291020/1‑50 (MQ=255) tCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGcc < 2:1548313/50‑1 (MQ=255) cgccgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGcc > 1:5069373/1‑49 (MQ=255) cgccgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGcc > 1:2065091/1‑49 (MQ=255) gccgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCaa > 2:924645/1‑50 (MQ=255) gccgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCaa > 1:112034/1‑50 (MQ=255) gccgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCaa > 2:4568183/1‑50 (MQ=255) gccgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCaa > 2:2235769/1‑50 (MQ=255) ccgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAAt < 1:2630178/50‑1 (MQ=255) ccgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAAt > 1:4874106/1‑50 (MQ=255) ccgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAAt > 2:1634642/1‑50 (MQ=255) ccgcATAAAGTGCCGAGCAAGGCGGTTTTCCCCGCCCCGTTCGCGCCAAt > 2:3995892/1‑50 (MQ=255) cgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAAt > 1:1690882/1‑49 (MQ=255) cgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAAt > 1:1391376/1‑49 (MQ=255) gcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAAt > 2:137817/1‑48 (MQ=255) gcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCa < 1:3264645/50‑1 (MQ=255) gcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCa > 2:4822153/1‑50 (MQ=255) gcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCa < 1:1202916/50‑1 (MQ=255) cATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAg > 2:4103836/1‑50 (MQ=255) aTAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGc > 2:1343956/1‑50 (MQ=255) tAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCg < 2:3552529/50‑1 (MQ=255) tAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCg > 2:3333539/1‑50 (MQ=255) tAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCg > 2:4680465/1‑50 (MQ=255) tAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCg > 1:4738208/1‑50 (MQ=255) aCGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGt > 1:924626/1‑49 (MQ=255) aCGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGt < 1:1244725/49‑1 (MQ=255) cGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGa > 1:1455611/1‑50 (MQ=255) gTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGa > 2:903485/1‑49 (MQ=255) gTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGa > 2:4991631/1‑49 (MQ=255) tGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGAc > 2:4388566/1‑49 (MQ=255) tGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGAc > 2:4561898/1‑49 (MQ=255) gCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACaa > 2:5039827/1‑50 (MQ=255) ccGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAt < 2:2852826/50‑1 (MQ=255) cGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtc > 2:3815902/1‑50 (MQ=255) cGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtc > 1:3749791/1‑50 (MQ=255) cGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtc > 2:5104331/1‑50 (MQ=255) cGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtc > 1:3832713/1‑50 (MQ=255) aGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtctc > 1:2518715/1‑50 (MQ=255) gCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCg < 2:1859622/50‑1 (MQ=255) gCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCg > 2:3425799/1‑50 (MQ=255) cAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGc > 2:3410388/1‑50 (MQ=255) aaGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGcc > 1:3060780/1‑50 (MQ=255) aaGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGcc < 1:1033174/50‑1 (MQ=255) | ACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCC > NC_000913/3593250‑3593347 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |