| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 332365 | 13 (0.120) | 168 (1.530) | 82/98 | 0.0 | 92.8% | intergenic (+489/‑6) | yahV/pdeL | protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| ? | NC_000913 | 377317 = | NA (NA) | intergenic (+6/+218) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
Only 100 of 185 total aligned reads displayed.
GGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGAGTTCGGTAC > NC_000913/332316‑332414 | ggAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGgtg > 1:728151/1‑50 (MQ=255) gAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGgtgt < 2:116934/50‑1 (MQ=255) aaTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGga < 1:4653956‑M1/50‑3 (MQ=255) aaTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGga < 1:5221455‑M1/50‑3 (MQ=255) aaTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGga < 2:2283323‑M1/50‑3 (MQ=255) aTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgat < 1:2589107‑M1/50‑4 (MQ=255) aTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgat < 1:2411092‑M1/50‑4 (MQ=255) aTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgat < 2:3185527‑M1/50‑4 (MQ=255) aTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgat < 1:1576906‑M1/50‑4 (MQ=255) aTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGga > 1:4568003‑M1/1‑47 (MQ=255) tCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgat > 1:3373245‑M1/1‑46 (MQ=255) tCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGtt < 1:145983/50‑1 (MQ=255) cGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGtt > 1:4921034/1‑49 (MQ=255) gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataag > 2:400617‑M1/1‑44 (MQ=255) gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataag > 1:513524‑M1/1‑44 (MQ=255) gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataag > 2:4315150‑M1/1‑44 (MQ=255) gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataag < 2:81083‑M1/50‑7 (MQ=255) cAGGTAATCACTCATGCTGAACAGCGATAAAAGATAAAGGTGTGTTCATg < 1:11024/50‑1 (MQ=255) cAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtc > 1:103141‑M1/1‑42 (MQ=255) cAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtc > 2:444413‑M1/1‑42 (MQ=255) cAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtc > 2:2999429‑M1/1‑42 (MQ=255) cAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtc < 1:535445‑M1/50‑9 (MQ=255) aGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcg > 2:3918500‑M1/1‑41 (MQ=255) ggTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgt < 1:2654667‑M1/50‑11 (MQ=255) ggTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgt < 1:3575078‑M1/50‑11 (MQ=255) tAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgc > 1:1945337‑M1/1‑38 (MQ=255) tAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgc > 1:2802159‑M1/1‑38 (MQ=255) tAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgc < 1:1286660‑M1/50‑13 (MQ=255) cACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg > 1:1177345‑M1/1‑34 (MQ=255) cACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg > 1:4212367‑M1/1‑34 (MQ=255) aCTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcag < 2:3306715‑M1/49‑17 (MQ=255) aCTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcag < 1:2058895‑M1/49‑17 (MQ=255) aCTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg > 2:4949934‑M1/1‑33 (MQ=255) aCTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCATGAATTCAtgt > 1:4044489/1‑50 (MQ=255) cTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagat > 2:1581021‑M1/1‑32 (MQ=255) cTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagat > 2:5031290‑M1/1‑32 (MQ=255) cATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgc > 1:1927316‑M1/1‑30 (MQ=255) cATACTGAACAGCGATAAAAGATAAAGGTGTGTTCATGAATTCATGTGAt > 1:4058416/1‑50 (MQ=255) aTACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcc > 2:4591238‑M1/1‑29 (MQ=255) tACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcct < 2:709466‑M1/50‑23 (MQ=255) tACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcct < 1:3886571‑M1/50‑23 (MQ=255) tACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcct > 2:1315287‑M1/1‑28 (MQ=255) tACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcct < 2:2193317‑M1/50‑23 (MQ=255) aCTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctg < 2:2838859‑M1/50‑24 (MQ=255) aCTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcct > 2:2075179‑M1/1‑27 (MQ=255) aCTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcct > 1:424487‑M1/1‑27 (MQ=255) cTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctga < 1:2724407‑M1/50‑25 (MQ=255) cTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctg < 2:3109200‑M1/49‑24 (MQ=255) cTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctg < 1:4451431‑M1/49‑24 (MQ=255) tGAACAGCGCTAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat > 2:1416469‑M1/1‑25 (MQ=255) tGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat > 1:3691466‑M1/1‑25 (MQ=255) gAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatg > 1:2274207‑M1/1‑24 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgc < 1:1865550‑M1/50‑28 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatg < 1:904542‑M1/49‑27 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat < 2:1301975‑M1/48‑26 (MQ=255) aGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgac > 2:2642603‑M1/1‑20 (MQ=255) aGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgac < 1:3746702‑M1/50‑31 (MQ=255) aGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgac > 1:3952833‑M1/1‑20 (MQ=255) aGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgac > 1:3523989‑M1/1‑20 (MQ=255) aGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgac > 1:3085273‑M1/1‑20 (MQ=255) aGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgac < 2:2334698‑M1/50‑31 (MQ=255) gCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacg < 1:1781842‑M1/50‑32 (MQ=255) gCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacg > 2:2609223‑M1/1‑19 (MQ=255) gATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgct < 1:2031862‑M1/50‑34 (MQ=255) gATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc > 2:3728683‑M1/1‑17 (MQ=255) gATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc > 1:508901‑M1/1‑17 (MQ=255) aTAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgcta < 2:1578270‑M1/50‑35 (MQ=255) tAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctat < 2:4081615‑M1/50‑36 (MQ=255) tAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctat > 1:4803496‑M1/1‑15 (MQ=255) tAAAAGATAAAGGTGTGTTCATGAATTCATGTGATTTTCGTGTTTTTCTg < 2:4552014/50‑1 (MQ=255) aaaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatg > 1:3501847‑M1/1‑14 (MQ=255) aaaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatg > 2:2316614‑M1/1‑14 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc > 1:825183‑M1/1‑13 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc < 1:5016240‑M1/50‑38 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc < 2:2972483‑M1/50‑38 (MQ=255) aaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcg > 2:5034930‑M1/1‑12 (MQ=255) aaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcg > 1:256564‑M1/1‑12 (MQ=255) aaGATAAAGGTGTGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCaa < 2:2755793/50‑1 (MQ=255) aGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgc < 2:2488141‑M1/50‑40 (MQ=255) aGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgc < 2:2413839‑M1/50‑40 (MQ=255) aGATAAAGGTGTGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAag < 1:1659423/50‑1 (MQ=255) gATAAAGGTGTGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAaga < 2:641746/50‑1 (MQ=255) aTAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgt > 2:3368967‑M1/1‑9 (MQ=255) aTAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgt > 2:1733224‑M1/1‑9 (MQ=255) tAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtc > 2:568847‑M1/1‑8 (MQ=255) tAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtc < 2:4744234‑M1/50‑43 (MQ=255) aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtctt < 1:4089850‑M1/50‑45 (MQ=255) aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtct > 1:5043915‑M1/1‑6 (MQ=255) aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtct < 1:2938965‑M1/49‑44 (MQ=255) aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtct < 1:1675144‑M1/49‑44 (MQ=255) aGGTGTGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGAGTTCg > 1:188376/1‑50 (MQ=255) ggTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttat < 1:548978‑M1/50‑47 (MQ=255) ggTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttat > 2:2246184‑M1/1‑4 (MQ=255) gTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttat > 1:3197422‑M1/1‑3 (MQ=255) gTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttat > 1:5067439‑M1/1‑3 (MQ=255) gTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttat > 1:598765‑M1/1‑3 (MQ=255) tGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatca < 2:4306224‑M1/50‑49 (MQ=255) tGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttat > 1:4755837‑M1/1‑2 (MQ=255) ggataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatcag > 2:513672‑M1/1‑1 (MQ=255) ggataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatcag > 2:1989039‑M1/1‑1 (MQ=255) | GGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGAGTTCGGTAC > NC_000913/332316‑332414 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |